KEGG   Thalassiosira pseudonana: THAPSDRAFT_264095
Entry
THAPSDRAFT_264095 CDS       T01078                                 
Symbol
TF2D2
Name
(RefSeq) transcription factor IID, TATA box binding protein
  KO
K03120  transcription initiation factor TFIID TATA-box-binding protein
Organism
tps  Thalassiosira pseudonana
Pathway
tps03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:tps00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    THAPSDRAFT_264095 (TF2D2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:tps03000]
    THAPSDRAFT_264095 (TF2D2)
   03021 Transcription machinery [BR:tps03021]
    THAPSDRAFT_264095 (TF2D2)
Transcription factors [BR:tps03000]
 Eukaryotic type
  beta-Scaffold factors with minor groove contacts
   TATA-binding proteins
    THAPSDRAFT_264095 (TF2D2)
Transcription machinery [BR:tps03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     THAPSDRAFT_264095 (TF2D2)
  RNA polymerase III system
    TFIIIB
     THAPSDRAFT_264095 (TF2D2)
  RNA polymerase I system
    SL1/TIF-1B
     THAPSDRAFT_264095 (TF2D2)
SSDB
Motif
Pfam: TBP DUF3378
Other DBs
NCBI-GeneID: 7451609
NCBI-ProteinID: XP_002293666
JGI: 264095
UniProt: B8CCX9
Position
14:15907..16407
AA seq 167 aa
TADLGVRLDLKQIALRCRNTEFNPRRFAAVIMRLREPRATALLFSSGRMVITGTKSSHNC
SLATKKFAYILERVGFQPAGFIDFKIQNVVGTVDVGFPIRLEGVVYAHPTFSSYEPELFP
GLIYRLVQPRVVLLIFVSGKVVITGAKTEEQMVEALRKVYPVLVEFR
NT seq 501 nt   +upstreamnt  +downstreamnt
acagccgatctaggagtacgcctagaccttaaacaaatagccctccgctgccgcaacacc
gaattcaaccctcgtagattcgccgccgtaatcatgcggctacgagagcctcgcgccacg
gccctcctcttcagctcaggtcgtatggtcattaccggcacgaagagctctcacaattgc
agtctggccactaaaaagtttgcctatattttggagagggtggggtttcagcctgccggg
tttattgactttaagattcagaatgtggtggggacggtggatgtggggtttcctattcgg
ttggagggggtggtgtatgctcatcctacgttttcgtcttatgagcctgagttgttccct
ggattgatttataggttggttcaaccgagggtggtgcttttgatattcgtgagtggaaag
gtggtgattacgggtgccaagacggaggagcagatggtggaggcgttgagaaaggtttat
cctgtgctggtggagtttagg

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (52)   
   KEGG ORTHOLOGY (1)   
   RefGene (47)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (62)   

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