KEGG   Thalassiosira pseudonana: THAPSDRAFT_269076
Entry
THAPSDRAFT_269076 CDS       T01078                                 
Name
(RefSeq) ubiquitin specific protease
  KO
K11836  ubiquitin carboxyl-terminal hydrolase 5/13 [EC:3.4.19.12]
Organism
tps  Thalassiosira pseudonana
Brite
KEGG Orthology (KO) [BR:tps00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01002 Peptidases and inhibitors [BR:tps01002]
    THAPSDRAFT_269076
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:tps04121]
    THAPSDRAFT_269076
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:tps04147]
    THAPSDRAFT_269076
Enzymes [BR:tps01000]
 3. Hydrolases
  3.4  Acting on peptide bonds (peptidases)
   3.4.19  Omega peptidases
    3.4.19.12  ubiquitinyl hydrolase 1
     THAPSDRAFT_269076
Peptidases and inhibitors [BR:tps01002]
 Cysteine peptidases
  Family C19: ubiquitin-specific protease family
   THAPSDRAFT_269076
Ubiquitin system [BR:tps04121]
 Deubiquitinating enzyme (DUB)
  Ubiquitin-specific proteases (UBPs)
   UBP/USP
    THAPSDRAFT_269076
Exosome [BR:tps04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   THAPSDRAFT_269076
SSDB
Motif
Pfam: UCH UBA UCH_1 zf-UBP
Other DBs
NCBI-GeneID: 7443623
NCBI-ProteinID: XP_002291061
JGI: 269076
UniProt: B8C5R3
Position
6:870351..873115
AA seq 773 aa
MDTSTGTSATKLGVGVEGGFQSDLDKYDTISTHSIVLMNKSSGIVVELPYNEDTKNDFPM
LVSQSADSVINHAGLAVQQDLKAWELDEEPKPVSKYAEGLPFVDNGVKVSSNPADWKCEQ
TGEVTDHLWLNLSDGFIGGGRKNWDGSGGTNGALDHFAATGEKYPLVVKMGTITDDISTA
DCYSYAKDEDGPVTIPNLKELLEKRGIIVAGMQKTVKSTAELEVELNATYAFDAITEKGA
HLVPVAGPGLQGLQNLGNSCYMNSVVQMLLGGSIPELASRYGSVGSDVTKNPLIGISASS
ASNDLLCQAAKLSTALTSGVFCRPLPESVEVSDPSSSDPKYRLAPRMFKNVVGHDHVDFG
TGQQQDAAQYFQYLLESKDDSDAALVTSHLFSYKTESRLVCEADSLIKYKESPAETMLSL
RIPMSEATTAVGDAPDVKRQKSEDSGEDGKEKKEVPTVTIDACLNAWSASTTIDDCRWPH
LQNAVSRATSTTRFANFPRYLLVHMQRYELGDDWQPHKIEVDIDVPEEISLHTLRSTGPQ
DGENLVPPESEVGEAPAVPSASTLDENALSQLIEMGFNMNGCKRALMAVGGSNVEAAMNW
VFEHNGDADFNDPLPEGSESAGVAAASDSGVDEGVVMSLVENLGCFNADQVRAALKHCNG
AADRAADWLFSHMDDLDSAIASLDNVAPAGNTVSSKSSVPLEDGDGKYNLVGLVSHIGKN
TGSGHYVAHLKKDGKWVIFNDEKVALSEHPPTRHAYMYLFQRSDTVGSPHAGY
NT seq 2322 nt   +upstreamnt  +downstreamnt
atggatacaagtacggggacatcggctacaaagctaggagtgggtgtggagggaggattt
caatccgatctagacaagtacgacactatttcaacccattccattgtcctcatgaacaaa
tcatccggtatcgttgtcgaactgccctacaatgaagacaccaaaaatgatttccccatg
ctagtatcacagagcgccgattcggtcattaaccatgctggtttggcagtacagcaggat
ttgaaggcgtgggagttggatgaggaacccaagcctgttagcaagtacgccgagggattg
ccatttgtggataatggggtgaaggttagctctaatccagctgattggaagtgcgagcaa
actggagaagtgacagatcacctatggctcaacctaagtgatggtttcatcggtggagga
cgtaagaactgggacggaagtggaggtaccaacggagcattggaccatttcgcggccact
ggtgagaagtatcccctcgttgtgaagatggggacaatcacggacgatatcagcactgca
gattgttattcgtatgcgaaggatgaggatggtcctgttacgattcctaatttgaaggag
ctattggagaagcgtggcattattgttgctggaatgcaaaagactgtcaaatccactgct
gaattggaagttgaactcaacgcaacgtatgcttttgacgccatcactgagaaaggagca
catcttgtgccagtggctggaccaggtcttcaggggctacaaaaccttggcaactcttgt
tacatgaactctgttgtccaaatgcttctcggcggatcaatacctgaactagcttctaga
tatggctctgttggatctgacgtgacgaagaatccactaattgggatatcggcatcttcg
gcatcaaacgatttgctttgccaggcagccaaactctccactgctttgacgagtggtgtg
ttttgtcgtccgcttcctgaatccgttgaagtatcagacccttcttcctcggatcccaaa
tatcggttagctcctcgtatgttcaagaacgtcgtgggacatgatcatgtcgactttggg
actggccaacagcaggatgctgctcagtactttcagtacctgttggagagcaaagatgac
agtgatgctgctctcgttacgtcgcatttgttctcatacaagacagagtcacgtttggtt
tgcgaggctgatagtttgatcaagtacaaagaaagtcccgcagaaacgatgctgagtctc
cgtatccccatgtctgaagcgacaaccgccgttggtgatgctcctgatgtgaagcgacaa
aagtctgaagattctggagaagatggcaaagaaaagaaggaagtgccaactgttactatt
gacgcatgtctgaatgcatggtctgcttctaccaccatcgatgactgtcgctggcctcat
ttgcagaatgccgtgagccgtgctacgtcgacaactcgcttcgcaaattttccacgttat
ctcttggtgcatatgcagcgttacgaactcggcgatgattggcaacctcacaaaattgaa
gtcgacattgatgttccagaagagatttcacttcatacgctcaggagcactgggcctcaa
gacggagagaacctcgtccctcctgagtccgaagttggagaagctcccgctgtaccctcg
gcttctacacttgatgagaatgcattgtcacagctcattgaaatggggttcaatatgaac
gggtgtaagagagctttgatggccgttggcggatccaacgttgaagcagcaatgaattgg
gtgtttgagcacaatggagatgctgacttcaacgatcctttgcctgaaggaagtgaaagt
gctggtgtggctgcagcaagtgattctggcgttgacgaaggtgtcgtcatgtcgctcgtt
gagaatcttgggtgtttcaatgcagatcaagtacgagcagcattgaagcactgcaatggt
gctgctgatcgtgcagcagactggttgttctctcacatggatgatctcgacagtgccatt
gcatctttggacaacgttgctccggcagggaacactgtatcgtcgaagtcttcagttcct
ctagaggatggagatggcaagtacaacttggttggtttggtcagtcatattggaaagaat
actggaagcggtcactatgttgctcacttgaagaaagacggcaaatgggttatcttcaac
gatgagaaggttgccttgtccgagcaccctcctactcgccatgcctacatgtacttgttt
cagcgaagtgatactgttggatcgcctcatgctggctattag

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (302)   
   KEGG ORTHOLOGY (1)   
   RefGene (297)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (316)   

Download RDF
DBGET integrated database retrieval system