KEGG T01078: THAPSDRAFT

Thalassiosira pseudonana: THAPSDRAFT_269540

Entry

THAPSDRAFT_269540 CDS T01078

Gene name

CHC

Definition

clathrin heavy chain

Orthology

K04646

clathrin heavy chain

Organism

tps Thalassiosira pseudonana

Pathway

tps04144

Endocytosis

Class

Cellular Processes; Transport and catabolism; Endocytosis [PATH:tps04144]

SSDB

Motif

Pfam:

Clathrin Clathrin_H_link Clathrin_propel Clathrin-link

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

AA seq 1718 aa
MAGVPIAFSEVLNLQQLGIPETSIKHGLTTMESDKWIVSVEPTQVSLIDLQNQAAVTRRP
IKAEAAVMNPSSNILALRSGKMIQMFNLDTKQKLKSHDMDSPIVFWKWTSADNLALVTAT
SVHHWSSTEGSSAPTKMFDRHPTIGPNTQIINYQVSPDSKWCLLGGISANPGGGVNGNMQ
LYSVEKKVSQPLQGHAGAFHKFKVSGREDEAQVLVFHEKKSDDPAHKLFVMEVGRDPSKG
QPFRIPPTVIPVPPEAAADFPVSLVVDAKDDVAFLLSKMGFVYMFDIQSGKTMFRTRITQ
ETVFVTCSQSSTGAVFGITVRTGKVLRISLNGQNLVPYIVNTLRDNDLAIKVAGRLGLPG
AEHLYTAEFERLISAGQVKEAAVLVANSGSALRTPQTIARFQQIPAQPGAPQPVFQYFST
LLENVKLNEQESIELAKPVLQQGRPQLMEKWLKDDKLHCSEALGDLIMPHDTAMALSVYL
RSECHAKAIQCFVQRGEYDKIVPYSTSVGYSMDYSSMLSQLLFNNPQGALDLAKGLVSAE
GGPLIDIQATAEAFLSSNRVQETTAFLLEALKDNKQEHAYLQTKLLEINLIGGAPQVADA
IMQNGILTHYDKAHVGKLCERAGMWQRAAEHYTDINDIKRVFKNSHQMNPEFVVTYFGKL
NRDQSIALLKDMLSRGPTNMQVCVEVAKKYHEELGASELVKVFEANKATEGLYYFLGAVV
NFSEDSVVHFKYIQSACMLGQFKEAERVCRDSNIYDPAEVKEYLKNAKLPDPRPLIHVCD
RFDFVDELTEYLYLNSLLQYVEVYVTKVSPTKTPQVVGKLFDLGANQDFVKRILMAVGTA
CPVDEMVEIAETRNRLRMLQPWLEARVATGSTEPGTHNALGKIYIQMNKDPKAFLTNNMF
YEPKVLGPFCESLDPSLAFVAYKKGAGECDDELIKISFTHGLYRDLARYLVERQDLELWA
KSATEKESQRRQLIDQVVEWALPESTSADEVSCTVKAFMAADLPGELITLLERIILQGSD
FSDNKNLQNLLILTAIRADHTRVASYIDQLDNFDAKDIALICVSESHMLYEEAYSIYNKF
AKPEFTQEKEEQVEMQVLAIGVLVDFMKDLDRAKGFANQVDEKPVWSKLGKSQLEEKMAA
EAILSFINAEDASEYVKVCAEANEAEIYTELIPFLKMARKGLQENLLDTELIYAYAKTNN
LTELEVFVNGPNVSNIQNIGDRCFSEGLYHAAKLLYTNINNNSKLALCHIHLEEYREAVA
AATKANNVSTWKQVCFACLKADEFRLASTCGLEVIKYPDHLDEVVTFYSDLGHFDHLISL
FEQGLGLEDAHIGIFTELGILYTKHVPDKVMEHCKVFFSKLNVSKVVRACERARLWAPAV
YLYMADKQFDNAVKVMSERANSFDNDLFLDSIVKVRNAEIMYKAVNFYLTMHPTLFTRLM
EVLEDHVDHSRVVNQLRRTGDWALQIGQAYMKSVQKANLSAVNEALNELYIEDEDYESLR
KSIDKFKNFNMIALASKLATHELLEFRRISAYVYRCNSKWSQSIELSKNDRMWKDCIDTA
NESADAEIIENLLRFFCETSEKECFCAALYTCFAHVRPDVVLELGWLNGYHNFIMPFFIQ
NMRQTHDRLRALEERTKPPKEDENQDLIAQTYSQLGGFNNMLMLENAPGGGMPGMPPQHG
GGIDMSGFANAGGMQLQPGMMPNGGMPQPGMMPNGGMY

NT seq 5157 nt +upstreamnt +downstreamnt
atggcgggggttcctattgccttcagcgaggtgctcaatcttcaacaattgggcatcccc
gaaacctccatcaaacatggcctcaccaccatggaatccgacaaatggatcgtctccgtc
gaacccacccaagtctcactcattgacctccaaaaccaagcagccgtcacccgtcgtccg
atcaaggcagaagcagccgtcatgaacccatcctccaacattctcgctttgcgatctgga
aagatgattcaaatgttcaatcttgacacgaagcaaaagttaaagtctcacgatatggac
agtcccattgtcttctggaagtggacttcggcagacaaccttgccctcgtcaccgccacc
tccgtacaccactggtcgtccaccgaggggtcctccgcccccaccaaaatgtttgaccgt
catccaaccattggacccaatacccaaatcattaattatcaagtctcccccgattccaag
tggtgtttgctcggtggcatcagtgccaatcccggtggcggagtcaatggcaacatgcag
ctttacagtgtggagaagaaggtgtctcagcctcttcagggacatgccggtgcatttcac
aagttcaaggtgtcaggtagggaggatgaggctcaggttctcgtctttcacgagaagaag
tcagatgatcctgcacataagttgttcgtgatggaggtgggaagggatccttccaaggga
cagccgtttcgtattccccccactgtgattcctgtgcctccggaggcagctgcggatttc
ccagtgtctcttgtggtggatgcgaaagatgatgtcgcgttccttctttccaagatgggg
ttcgtctacatgtttgatattcagagtggaaagaccatgtttcgcacaaggataacgcag
gagactgtatttgtcacttgttctcagtcttctactggggcagtgtttggaattaccgtt
cgtacgggaaaggtgcttcgtattagcttgaatgggcagaatttggttccttacattgtc
aatacgttgagggacaatgatttggccattaaggtggctggacgattgggtcttcctgga
gctgagcacttgtacactgccgagtttgaacgtctcatctctgccgggcaagtgaaggaa
gcggctgttcttgtggccaatagtggctcggcattgaggactcctcagacgattgcgcga
ttccagcaaattcctgcacagcctggtgctcctcagcccgtgtttcagtacttctctacc
ttgttggagaatgtcaagttgaatgagcaggagagtattgagttggccaagccggtgttg
cagcagggaaggcctcagctgatggagaagtggttgaaggatgataagcttcattgctcc
gaggcgttgggtgatttgatcatgcctcacgatactgcaatggctttgagtgtgtatttg
aggagcgagtgtcatgccaaggctatccagtgcttcgtgcaacgtggggagtacgacaag
attgttccctactcgacgtctgtgggatactcgatggactattcttccatgctcagtcag
ctcttgttcaacaaccctcagggtgctttggatttggctaagggtttggtcagtgccgag
ggaggaccattgattgatattcaggctaccgccgaggcctttctctccagcaacagggtg
caagagactactgccttcttgctggaagcactcaaggacaacaaacaggagcatgcctac
ctccagacgaagcttcttgagatcaacctcattggtggagctccccaagttgctgacgcc
atcatgcagaatggaattttgactcactacgataaggctcacgttggaaagctttgcgag
cgtgctggaatgtggcaacgtgctgctgaacactacaccgacatcaacgatatcaaacgt
gtcttcaagaacagccaccagatgaatcctgagtttgttgtcacctactttggaaagttg
aaccgtgatcagagcattgctcttttgaaggacatgctctcccgtggtcccaccaacatg
caagtctgtgtggaggttgccaaaaagtaccacgaggagcttggagcgtcggagcttgtc
aaggtgtttgaggccaacaaggcaacggagggtctttactacttccttggcgccgtggtg
aacttctcagaggattcggtagttcatttcaagtacatccaatctgcgtgtatgcttggt
cagttcaaggaggctgaacgtgtgtgcagggattctaacatttacgatcctgctgaagtg
aaggagtatcttaagaatgcgaagcttcccgacccacgtcctcttattcacgtgtgcgac
cgtttcgatttcgtggacgagcttacggagtatttgtacttgaacagtcttcttcagtac
gttgaggtctacgtcaccaaagtctctcctaccaaaactccccaggtcgttggaaagctc
tttgacctcggagccaatcaggatttcgtcaaacgtattctgatggctgttggaactgcc
tgccccgtggatgagatggtggagatcgccgagactcgtaatcgtcttcgtatgctccag
ccttggcttgaggctcgtgttgccactggaagcaccgaacctggaactcacaatgctctc
ggaaagatttacattcagatgaacaaggatcccaaggcgtttttgaccaacaatatgttc
tacgagcctaaagttcttggtcctttctgtgagagtttggatccttcgttggcattcgtt
gcttacaaaaagggtgctggagagtgtgacgatgagttgatcaaaatcagtttcacccat
gggttgtatcgtgatcttgcgaggtatctcgttgagcgtcaggatttggagttgtgggcg
aagtctgctacggagaaggagagtcagcgtaggcaactcattgatcaggtggttgagtgg
gcgctccctgagagtacttctgctgatgaggtgtcttgtactgtgaaggcattcatggct
gccgatcttcccggagagctcatcactcttcttgagcgcattatcttgcaaggatcggac
ttctcagacaacaaaaatcttcagaacttgctcatcctcaccgccatccgtgccgatcat
acccgtgttgcatcctacatcgatcagttggataactttgacgccaaagatattgcactc
atttgcgtgtctgagagtcacatgctctacgaggaggcatacagcatctacaacaagttt
gccaagcctgaattcacccaggagaaggaggaacaggtggagatgcaagtccttgccatt
ggcgtcctcgttgacttcatgaaggatctggatcgtgctaagggctttgctaaccaagtt
gacgagaagcctgtgtggtctaagcttggtaaatctcagttggaggagaagatggctgcc
gaggctattctcagtttcatcaatgctgaggatgccagtgaatacgttaaagtgtgtgcc
gaagccaacgaggctgaaatctacacggagcttatccccttcctcaagatggcacgtaag
ggattgcaggagaatcttttggatacggagctcatctacgcatatgctaagaccaacaac
ttgactgagcttgaggtgtttgtgaacggacccaatgtttcaaacattcagaacatcggc
gatcggtgcttctctgaggggctctaccacgcggcgaagctactctacacgaacatcaac
aacaactcgaagcttgcactttgtcacattcatttggaggagtaccgtgaggctgttgct
gcagctaccaaggcgaacaatgtttctacttggaagcaggtgtgctttgcctgtctcaag
gctgacgagttccgccttgcctccacttgtggacttgaggtcatcaaataccctgatcat
ttggacgaggtggttaccttctactctgatcttggtcactttgatcatctcatttcgctc
tttgagcaaggacttggtttggaagacgctcacattggtatcttcactgaacttggaatt
ctttacactaagcacgttcccgataaggtcatggaacattgcaaggtgttcttcagcaag
ctcaacgtgtccaaagtcgtccgtgcctgcgagcgcgctcgtctctgggctcccgctgtc
tacctctacatggctgacaagcagtttgacaatgctgtcaaggtcatgtctgaacgtgcg
aactccttcgacaacgacttgttcttggattccattgtgaaggttcgcaatgccgagatc
atgtacaaggcagtgaacttctacctcaccatgcacccaacgctttttacgaggttgatg
gaggtgcttgaagaccatgttgatcactccagggtcgtcaatcagcttcgtcgtactggt
gactgggcattgcagatcggccaggcctacatgaagtctgtacagaaggcgaatctcagt
gctgtcaatgaagctctcaacgagctctacattgaagatgaggactacgagtcattgagg
aagtccatcgacaagttcaagaacttcaacatgattgctcttgcttccaaacttgccacc
cacgagcttttggagttccgtcgtatctccgcctatgtctaccgatgcaacagcaagtgg
tctcaatccatcgagctttccaagaacgaccgcatgtggaaagactgcatcgacaccgcc
aacgaatctgccgatgctgaaatcattgagaatttgcttcgcttcttctgcgagacatcg
gagaaggagtgcttctgtgctgcactttacacttgcttcgctcacgttcgtcctgacgtg
gttcttgagcttggatggctcaacggttaccacaacttcatcatgcctttctttatccag
aacatgcgtcagactcacgatcgtcttcgtgctttggaggagcgcaccaagcctccaaag
gaagacgagaaccaagacctaatcgcacaaacttacagtcaacttgggggcttcaacaat
atgctaatgcttgagaatgctcctggaggtggaatgccgggaatgccaccacagcatggg
ggaggcatcgacatgagtggctttgcgaatgctgggggaatgcaactgcaaccaggtatg
atgccgaacgggggaatgcctcaacctgggatgatgcctaacggcggcatgtattag

All links

Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-TPS (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (14)   

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