KEGG   Thalassiosira pseudonana: THAPSDRAFT_270029
Entry
THAPSDRAFT_270029 CDS       T01078                                 
Symbol
cul1
Name
(RefSeq) cullin family-like protein
  KO
K03869  cullin 3
Organism
tps  Thalassiosira pseudonana
Pathway
tps04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:tps00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    THAPSDRAFT_270029 (cul1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:tps04121]
    THAPSDRAFT_270029 (cul1)
   03400 DNA repair and recombination proteins [BR:tps03400]
    THAPSDRAFT_270029 (cul1)
Ubiquitin system [BR:tps04121]
 Ubiquitin ligases (E3)
  Multi subunit Ring-finger type E3
   Cul3 complex
    Cullin
     THAPSDRAFT_270029 (cul1)
DNA repair and recombination proteins [BR:tps03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    Other NER factors
     THAPSDRAFT_270029 (cul1)
SSDB
Motif
Pfam: Cullin Cullin_Nedd8
Other DBs
NCBI-GeneID: 7443355
NCBI-ProteinID: XP_002294721
JGI: 270029
UniProt: B8CER2
Position
20:complement(312742..315726)
AA seq 742 aa
MDTPSASSTFQSLSSAMDEIHNRNASTLSFEELYRNAYNLVLHKHGGLLYEGVTERLTWH
LRRSGGRLVSSGREYKLLEELSTVWKEHRITMVMVRDIFMYMDRTYVPQNRRRPVYDLGL
YLFRRVSPTLGNVTSLLLLRVVHQDRMDRLDDAPQRIALCKSLIHMLLELAHATSAGANA
IPVYERDFEEVFLGESQDFYRMESASRLSQGAAMEYVHHAQARLVEEKARAALLDLPAQT
RVNLMNIVETELIERHAKTLVEMEGSGFADNNGVVVDHARIADLAAMYELFSRVPSSVNH
LRDALSERIRLDGRSLVRDQETNVAPPAAFVKGVLAMRERFHAVVTEAMKGEKKAQKRMK
EAFEDFLNADARAANCLAVYVDELLRVGLRGADERKVSSELDRAIVIFRFLADKDVFEAY
YKSHLAKRLLGNKSGNEDAERAMVSLLKAECGYQFTSKLEGMFNDIRISKETAEKYRSHK
KKSNNEPVDVEVSVLTTGYWPSQNVPPCILPPPVRAAMDRFQKYYLNTYTGRKLSWQTLA
GTAEIRATFPPPKGSSKPRRHDLTVTTYQMCILVLFNNRDTLTLKQIREEIQIPEDELRR
HLVSLCTPKHRILKKGSKGKAISGDDDTFTYNSDYTSKMTKVKVPMVSMRDATASAKSDG
AAGSLPASVEEDRRHLLEAAIVRIMKARKMLNHNDLVAEVTKQLAGRFIPPPQFVKKRVE
SLIEREYLERDEADRRVYLYMA
NT seq 2229 nt   +upstreamnt  +downstreamnt
atggacaccccctccgcctcctccaccttccagtccctctcctccgccatggacgaaata
cacaatcgcaacgcatccacgttatcttttgaggaattgtatcgcaatgcgtataattta
gtactgcataagcatgggggattgttgtatgagggggttacggaacggctgacgtggcat
ttgaggaggagtgggggtcggttggtcagcagtggaagggagtacaagttgttggaggaa
ctgagtactgtgtggaaagaacatcgtattaccatggtcatggtgcgggatatctttatg
tatatggatagaacgtatgttcctcagaatagaagacgtccggtgtatgatttgggtttg
tatttgtttcgaagggtgtctccaacattggggaatgtgactagtttgttattgctacgg
gtggttcatcaggataggatggatcgattggatgatgccccgcagaggattgcactttgt
aagagcttgattcatatgctgttggagttggctcatgcgacttcggcgggggcaaatgct
attccggtgtatgaacgtgattttgaagaggtgtttttgggagagtctcaagacttttac
aggatggagagtgccagtcgtttgagccagggggctgccatggaatacgtccatcatgct
caagctcgtctggtggaggaaaaggcacgagctgctttactcgatcttccagcccaaaca
cgtgtcaatctaatgaacattgtggagactgagttgattgaacgtcatgccaaaaccctc
gttgaaatggagggaagtggattcgctgacaacaatggagtggtggttgatcatgcccgt
attgctgatctcgcagccatgtatgagttgttctctcgtgttccatcatcggtgaatcac
cttcgtgatgcgttgtcggaacgtattcgtttggatggccgatcgctcgtaagggatcaa
gagacgaatgttgcaccacctgcagcgtttgtaaagggggtgcttgcgatgagggaaagg
ttccatgcagtggttactgaggcgatgaaaggagagaagaaggcccaaaagaggatgaag
gaggcgtttgaggactttttgaatgcggacgcaagagcagccaactgtctcgctgtgtat
gtggatgaattgttgagggttggattacgtggggccgatgaacgaaaggtgtcgtcggaa
ttggatagggctattgtcatctttagattcttggctgataaggatgtctttgaggcatat
tacaagagtcatttggcaaagaggctactggggaacaaaagcggtaacgaagatgcagag
agggcgatggtctcgttgcttaaggctgagtgtgggtatcagttcacttccaagttggag
ggtatgtttaatgacataaggatttcaaaggagactgccgagaagtatcgctctcacaag
aagaagagcaacaatgaacccgtggatgtagaagttagtgttctcactactggatattgg
cctagtcaaaatgtgccgccgtgcattctacctccaccggtcagggctgcaatggatcgc
ttccaaaagtattacctcaacacttatactgggagaaagttgtcgtggcagacattggct
ggaacagctgagattcgtgctacctttcctcctcccaagggatcgtcaaaacctcgtcgt
cacgatcttactgtcacgacgtatcagatgtgcattctcgttctattcaacaaccgtgat
actctcacgttgaagcagattcgggaggagattcaaatccctgaggatgagttgcgtcgt
cacctcgtcagtttatgtacgccgaaacatcgtatcttgaagaagggttcaaaagggaag
gctatctccggcgacgatgatactttcacctacaacagtgattacacatcgaaaatgacg
aaggtaaaggttcccatggtgagcatgcgcgacgcaaccgcctcggctaaatcagatgga
gctgctgggtcgttacctgcgtcggtggaggaagatcgtcgtcacttgctcgaggcagct
attgtaagaatcatgaaggcaagaaagatgttgaatcacaatgacttggtggctgaagtg
acaaaacaactagctggtcggttcattcctccaccgcaatttgtgaagaagagggtggaa
agtttgattgaacgagagtatttggagagggatgaagctgatagacgggtctatctttac
atggcctag

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