KEGG   Thalassiosira pseudonana: THAPSDRAFT_32744
Entry
THAPSDRAFT_32744  CDS       T01078                                 
Name
(RefSeq) predicted protein
  KO
K12585  exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
tps  Thalassiosira pseudonana
Pathway
tps03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tps00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    THAPSDRAFT_32744
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tps03019]
    THAPSDRAFT_32744
Messenger RNA biogenesis [BR:tps03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Exosome cofactors
     THAPSDRAFT_32744
SSDB
Motif
Pfam: RNB OB_Dis3 CSD2 Rrp44_CSD1 Rrp44_S1
Other DBs
NCBI-GeneID: 7444060
NCBI-ProteinID: XP_002288744
JGI: 32744
UniProt: B8BXC2
Position
3:complement(571802..574023)
AA seq 712 aa
YTPHVDSSALSHGLQTNRYYQGVYRSNRDSYNDGYVSIRQGDDRVAVVVQGSSDVNRAVD
GDIVAVELFSLDKWLGGEESSGVDRSKVEKLKQKGGNDNDGAGIAADTAEPTVKDIDNIT
EEVAVDEAGDLRRPTGKVVGIIRRNFHKNYCGSLCTIDDAAADAEEKSTHPHDIIAAKHE
REHPDGITSTVVFFSVDPRVPPILLRTTQRERLVGMRILVSMDSWPADSEYPLGHYVKTL
GVTGTKDTETQVLLQEFRIPCEPFPAKVLACLPPPDYKIELEPGRADLRHIPVLSIDPPG
CKDIDDALHCTELPNGNWQVGVHIADVTHYVEAGSAIDLEAANRSTSTYLVNKRLDMLPS
LLTTDLCSLKGNVDRFAFSVLWEVTPDADIVDVEFKKSIIHSIAALTYQQAQSLIDKPDE
DCKDDIQVGAVKRLASLARKFRARRINAGALTLASPEVKFVLDSESLNPTDVQAYTLFEA
NAVVEEFMLLANVTVAKKILRHYPTLSILRRHPAPNRSMFDSLMRKAKTQRVSICIDDSK
KLADSLDEAGRTFKDPYLDQLLRILSTRCMSPAQYFCSGEYQAKDWHHYGLAAPVYTHFT
SPIRRYADVCVHRLLAAAIGVSPLPVFLSSKSYLHDLAANMNRRHRAAQLAGRASVQLHT
LIFFSGGEDGNEGGGTKEEDAYVLDVETAENTEPSFTVMVPRYGIEGRVRLS
NT seq 2136 nt   +upstreamnt  +downstreamnt
tatactcctcatgttgattcatcggcactttctcatggacttcaaaccaaccgatactat
cagggtgtataccgatcaaaccgtgattcgtataatgatggatacgtgtcgattcgtcag
ggagacgatcgtgttgccgtggttgttcagggaagcagtgatgtgaatcgtgctgtggac
ggggatattgtcgcagtggagttgttttcgctggacaaatggttgggaggagaagagtcg
agtggtgtcgacaggagtaaagtggagaagttgaaacaaaaggggggcaacgataacgac
ggtgctggtattgcagcagatacagcagagccaactgtgaaggatattgacaacatcaca
gaagaggtggccgttgatgaggcaggggatttgcgtcgtccaacgggaaaggtggttgga
ataatccgcagaaactttcacaagaactattgtggatcactttgcactattgacgatgct
gctgccgatgccgaggagaaatcaacccatcctcatgacatcattgctgccaagcacgaa
agagagcatcctgatggaatcacttcaactgtcgtcttcttctcagtcgaccctcgtgtt
cctcctattctacttcggacaacacaacgtgagcgtctcgtagggatgcgtattttggtt
tcaatggattcttggccagctgattcggaatatccacttggtcactacgtgaagacgttg
ggtgtaactggaacgaaggatacagaaacacaagtcttgttgcaggagtttcgcattcct
tgtgagccgtttccggcaaaggtactcgcttgcctcccgcctcctgactacaaaattgag
cttgaacctgggagagcagatctccgacacatccccgtgctctcgattgatccacctggg
tgtaaggacattgacgatgcgctgcattgtactgaactaccaaatgggaactggcaagtg
ggtgttcatattgctgatgtgacacattacgtggaagcgggaagtgcaattgatttggag
gcagcgaatcgttcaacctcgacgtacttggtgaacaagaggttggatatgttgccatcg
ttattgacgaccgacttgtgtagtttgaagggtaatgttgatcgctttgccttctctgtg
ttgtgggaagtcactcccgatgctgacatcgtggatgtggagtttaagaagagcatcatc
cattcaatcgctgcactgacttaccagcaggcacagtcactcattgacaagccggatgaa
gactgcaaagacgatattcaagttggagctgtgaaacgattggcgtcgttggcaaggaag
tttcgggctaggcgaataaatgctggagcactcacccttgctagccctgaggttaagttc
gtcttggacagtgaatctttgaacccaaccgatgttcaagcctacacactctttgaggcc
aatgcagttgtggaagagttcatgcttcttgcgaacgtcaccgttgccaagaagatttta
cgccattatcctactctttccatccttcgtaggcatccagctcccaaccgcagcatgttt
gatagtctcatgcgaaaagcaaagactcaacgagtatcaatctgcatcgacgactcaaag
aagcttgccgattctctggacgaagctggtagaacttttaaagatccctacctcgaccaa
cttctccgtatcctctccactcgctgcatgtctcctgcacagtacttctgtagtggggaa
taccaagcaaaagactggcatcactacggtttggcagctccagtttacactcactttaca
tctccaattcgccgttatgcagatgtatgtgtacatcgtctcttggcagctgcaataggt
gtgtcgccacttccagtgttcctgtcgtcaaagtcatatctgcatgatttggcggcaaac
atgaaccggaggcatcgtgccgcacaactggctggaagggctagtgtgcaacttcacact
cttatcttcttctccggtggtgaagatggaaacgaaggaggaggaacaaaggaagaggat
gcatatgtcttggacgtggagacggctgaaaataccgaaccttcgtttacagtaatggtg
ccgcggtatggaattgaaggtcgtgttcgcctatca

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (91)   
   KEGG ORTHOLOGY (1)   
   RefGene (86)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (103)   

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