KEGG   Thalassiosira pseudonana: THAPSDRAFT_41953
Entry
THAPSDRAFT_41953  CDS       T01078                                 
Name
(RefSeq) hypothetical protein
  KO
K14415  tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
Organism
tps  Thalassiosira pseudonana
Brite
KEGG Orthology (KO) [BR:tps00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:tps03016]
    THAPSDRAFT_41953
Enzymes [BR:tps01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.8  3'-phosphate/5'-hydroxy nucleic acid ligase
     THAPSDRAFT_41953
Transfer RNA biogenesis [BR:tps03016]
 Eukaryotic type
  tRNA spricing factors
   tRNA splicing ligase complex
    THAPSDRAFT_41953
 Prokaryotic type
   tRNA splicing ligases
    THAPSDRAFT_41953
SSDB
Motif
Pfam: RtcB
Other DBs
NCBI-GeneID: 7443254
NCBI-ProteinID: XP_002296380
JGI: 41953
UniProt: B8LBM8
Position
11
AA seq 480 aa
MKVPAEIFVNNDLQTLLVQELHDTCCGSREEADSAFIPALRQAANVAALPGIVKASLAMP
DVHSGYGFCIGNVAAFDMDDPQAVISPGGVGFDINCGVRLIRTNLTEKDVEGSVREELAE
ALFRNIPVGVGVSGGIPCSIDDLDQLLRNGVDWAIEKGYAWEEDKDHCEENGCMETADPN
CVSKRAKKRGLKQLGTLGAGNHYTEIQVVDEVYNTEAAKIMGIGTVGQVCIMIHTGSRGL
GHQVATDALQVMEEAMCRDAIDLNDRQLSCARISSKEGREYLAAMSAAANFAWVNRSCIT
YLARKAFSEVFQRESDDMDMHLVYDVCHNIAKVEQHIVDGEQKTLLVHRKGSTRAYPPCH
PDIPKDYQTIGQPVLIGGTMGTCSYVLVGTDKGMAETFGSTCHGAGRALSRNQSRIKLDH
NQVLNKLKEDGIAIRVASPKLVTEEAPESYKNVCDVIETCQVAGISEKVVKLRPIAVIKG
NT seq 1443 nt   +upstreamnt  +downstreamnt
atgaaagttcctgccgaaatctttgtcaataacgacttacaaacccttctcgtccaagag
ctacacgatacatgctgtggatctagagaagaagcagactctgccttcatcccagctcta
cgccaagcagccaacgtggctgctctccccgggatagtgaaagcaagcctcgctatgcca
gatgttcattctgggtatggattttgtattggaaatgtagctgcgtttgatatggacgat
ccacaagcggtgattagcccagggggagtgggatttgatatcaattgtggagtgaggttg
attcggacaaacttgacggagaaggatgtggaagggagtgtgagagaggagctggctgag
gctttgtttcggaatataccggtgggagtcggtgtgtccggtgggattccttgtagtatt
gacgatttggatcagttgttgaggaatggtgttgattgggctattgagaagggatatgcc
tgggaggaagataaagatcactgcgaagagaatggttgtatggagactgcagatccgaac
tgtgtttcgaagagggcaaagaagagagggctgaagcaattgggaacgttgggagcagga
aatcattatacagagattcaagtggtggatgaggtttataataccgaggcagcaaagatt
atggggattggaactgttgggcaggtatgcattatgatccacacaggatcgagaggattg
ggacatcaggtagctactgatgcgttgcaagtgatggaagaagccatgtgcagggatgcg
attgatttgaacgatcgtcaactcagttgtgctcgtattagtagcaaagaagggagagag
tatctggctgcaatgtcggcggcagccaactttgcatgggtgaaccgatcttgcatcaca
tacctcgctcgcaaagcattctcagaagtgtttcaacgcgaaagtgatgatatggatatg
catctcgtgtacgacgtctgtcataacattgccaaagttgaacagcatatcgtcgacggg
gagcaaaagacattgctcgttcatcgcaaaggaagtactcgtgcatatccaccttgccat
ccagatataccgaaggattatcaaaccatcggccagcctgtcttaatcggcggcacaatg
ggaacatgcagctacgtcttagtaggaacggacaaaggaatggctgaaacgtttggatct
acgtgtcatggggcgggaagagcattaagtcgcaatcaaagtaggatcaaactagatcac
aaccaagttctgaacaagctgaaggaagacggcattgcaatcagggtggcaagcccaaag
cttgtgacagaagaagctccagaatcatacaagaatgtttgtgacgtgattgagacgtgc
caagtggcagggatcagtgagaaggttgtaaaactgagacccatcgctgtcatcaaagga
taa

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (37)   
   KEGG ORTHOLOGY (1)   
   RefGene (32)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (47)   

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