KEGG   Turneriella parva: Turpa_3016
Entry
Turpa_3016        CDS       T02157                                 
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
tpx  Turneriella parva
Pathway
tpx03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:tpx00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    Turpa_3016
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:tpx03400]
    Turpa_3016
Enzymes [BR:tpx01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Turpa_3016
DNA repair and recombination proteins [BR:tpx03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      Turpa_3016
SSDB
Motif
Pfam: DEAD Helicase_C CarD_TRCF_RID UvrB_inter TRCF ResIII RecG_dom3_C UB2H ERCC3_RAD25_C DUF1474
Other DBs
NCBI-ProteinID: AFM13655
UniProt: I4B8P8
Position
complement(3149050..3152424)
AA seq 1124 aa
MAESALPKKLSAALQDLAAKTQAAANLPAGILPMLAFTRATTAPKPGRTLYIVPDDNTAL
EWLRALGSLHQLTLSQLETAALVSWGVIPYSFTAPDQEKEYHRTRAELFIRSEVPCLIVA
SVEGLTYPIATDLEVAEVERTLTPGMHFARSRFAEFLLSCGFRHANPVERPGEFCIKGGV
VDVFAPDEDLPVRLDFFGDEIETIKSFSHETQRSLGPVAEVRIAPLRPAVSHLAAAMQKF
AADRSLGESELTPVITSGGTNLAGYADIYPALRQVQNIAELWRGETFIADEESVRQRLKT
ISAERQYLFERSESKLKLAPEILFGDVARIEAMLSAAHAIQLTDPKDEDSQWHDAPRFGG
RLGLLKERLAQGDAENIWFFIESISQRDRLKAALTDILAPEIIPAFYPHGFTGNGVTVFS
EADIFGRVVKKYAGDKSISRILDSYTDLKEGDYVVHVNYGIGRFSALKRMRVQNNERDFI
ELRFADDDKLFVPLDQLNLVHKYIGSTENPRLDHLGKKSSWAKTRARVKRLVDSIAEELL
ELYAHRVNQKGFAFPPDSSFQHDFEAAFPFTETEHQLETIYAIKADMESEKPMDRLVCGD
VGFGKTEVAIRAAFKAAMAGKQVAVLCPTTILAFQHYRSFSKRFADYPVRIDYISRFRSP
SEVAEIKARLADGKIDIIIGTHALFADDVRYKSLGLMIIDEEQRFGVTHKEKLRQMRTNL
DCLALTATPIPRTLHMSLSGIRDLSIIETPPADRRKIETHVIAENEELLRLAFKHELERG
GQVYVLHNKVKTIEEQAIRLRALAPQARIAVLHGQMPETAIEEVMVDFYQHAYDILVSTT
IIESGIDIPNCNTLIVLGAHEFGLSQLYQLKGRVGRSDRQAYAYFFYPSPTMHTLSGDAE
RRLEVLAEYDDLGSGFRIAMKDLEIRGAGNLLGKEQSGEIMEIGFELYSQMLNDKVNELK
GKAVANDDFTSAIMLPCDWYFPDEYIADTRAKMEFYKSLSAAAGLDEFHEIREALVDRYG
KPPETVELMLLLEEIRQLAYMLRLERVAISPKTDDLKTPSEMPYFIVAPDHRLDMAKVSA
LLTRDKRVKLDTADPKRINLDIPQQPQLAFFRELSAILKYLANS
NT seq 3375 nt   +upstreamnt  +downstreamnt
atggctgaaagcgcgttaccgaaaaaactctcagcggcgctgcaagatctcgccgcaaag
actcaagcagcagcgaatctgccggcaggtattctgccgatgctcgcgttcacacgcgca
acaacggccccaaaacccgggcgcactctctacatcgtacctgacgacaataccgcgctc
gagtggctgcgcgctctgggctcactgcaccagctcacgttatcgcagctagaaaccgcc
gcgcttgtctcatggggcgtgataccttacagcttcaccgcacccgatcaggaaaaagaa
taccaccgcacgcgcgccgaacttttcattcgctcagaagtcccctgcctgatcgttgct
tcagtcgaaggtctgacctacccgatcgcgacagacctcgaagtcgccgaggtggagcgt
acgctcacacccggtatgcactttgcgcgcagtcgcttcgctgagtttctgctgtcctgc
gggtttcggcacgcgaatcctgttgaacgcccgggagaattttgcatcaagggtggcgtc
gtcgatgtttttgcccccgatgaagacctaccggttcgtctcgacttcttcggcgatgaa
atcgaaaccataaagtctttctcacacgaaacacagcgcagtctcggccccgtcgccgaa
gtgagaattgcacccctgcgcccggcggtttcgcatctcgccgctgcgatgcaaaaattt
gccgccgatagatcgctgggtgagagcgagctgacgccggtgattacttcgggtggcacc
aatcttgcaggctacgcagatatttacccggcgctgaggcaggtacagaacatcgctgag
ctctggcgcggtgaaacattcattgctgatgaagagagtgtcaggcagcgcctgaagaca
atttctgccgaacgccaataccttttcgaacggagcgaatcgaaattaaagctcgcaccc
gaaattcttttcggcgacgttgcgcgtattgaggccatgctcagcgcggcgcatgctatt
caactcaccgaccccaaagacgaagacagtcagtggcacgacgccccccggttcggcggc
cgcctgggcctcttgaaagagcgcctcgcgcagggggatgcagaaaatatctggttcttt
atcgaatcgatcagccaacgcgatcgcctcaaggcggcgctcactgacattctggctccc
gaaattataccggcattttatccccatgggttcaccggcaatggtgtcacggttttctcc
gaagcggatatttttggccgggtagtgaaaaaatacgcgggcgataagagcatcagccgc
attctcgacagctacaccgacctcaaagaaggcgattacgtcgttcacgtcaactatggc
atcggccggttctcggctctgaagcgcatgcgcgttcagaacaatgaacgcgactttatc
gaactccggtttgccgacgacgacaaactgttcgtgcccctcgaccagctgaatctcgta
cacaagtacatcggctcgactgagaacccccggctcgaccacctcggtaagaaatcttcg
tgggccaagacacgagcacgcgtcaagcgcctcgtcgattcgatcgccgaagaattgctc
gaactttatgcacaccgcgtgaaccagaagggtttcgctttcccccccgacagtagcttt
cagcacgacttcgaggcggcgtttccctttacagaaaccgagcaccagctcgagacgatc
tatgccatcaaggccgatatggaatcggaaaaaccgatggataggctcgtttgcggcgat
gtcggcttcggcaaaaccgaagttgcgattcgagcagcgttcaaggctgcgatggcgggc
aaacaggttgcggtgctctgcccgacgacgattctcgcctttcagcactaccgcagcttc
agcaagcgttttgctgattatcccgtgcgcatcgattatatcagccgatttcggtcaccg
tcagaagttgccgagatcaaagcgcgcctggcagacggcaagatcgatatcattattggc
acgcatgcgctctttgcagacgacgtacgctacaagtctctggggctgatgattatcgac
gaagagcagcgcttcggcgtgacgcacaaagagaagctgcggcagatgcgcacgaatctc
gactgtctggcgctcacggcgaccccgataccgcgcacgctgcacatgtcactctcgggc
attcgcgacctgagcatcatcgaaacgccgcccgcagaccggcgcaaaatagagacgcat
gttatcgccgaaaacgaagaactgttgcggcttgcctttaagcacgagctcgaacgtggt
ggccaggtatacgtattgcacaacaaagtaaagacgattgaagaacaggcgatcagattg
cgcgctctggccccgcaggcccgaatcgccgtgctgcacgggcaaatgcccgaaacggcg
attgaagaggtgatggtcgacttctaccagcatgcgtacgatattctcgtcagcaccacg
atcattgaatcgggaatcgatatacccaactgcaatacgctcattgtgctgggcgctcat
gaattcgggctcagccagctctaccagctgaaggggcgcgtcgggcgctcagaccggcag
gcgtacgcttactttttttatccctcgcccacgatgcatacgctgagcggcgacgccgaa
cgccgccttgaggtgctggcagaatatgacgacctcggttctgggtttcgcatcgcaatg
aaagacctggagattcgcggggcaggcaacctgctcggcaaagaacagagcggtgaaatc
atggaaatcggtttcgagctctattctcagatgctgaacgataaggtcaacgaactcaag
ggcaaggccgtggcaaacgacgatttcaccagcgcgatcatgctgccgtgcgactggtac
tttcccgacgaatacattgccgacacccgcgccaagatggaattttataaatcgttgtca
gcggccgcggggctcgatgagtttcatgaaatacgcgaagcgcttgtcgatcgttacggc
aagccacctgaaactgtcgagctgatgctgctgctcgaagaaatacgccaactcgcgtac
atgctgcgactcgagcgcgtcgccatttcgcccaagaccgacgacctcaagacaccgtca
gaaatgccctactttattgttgcacctgaccaccggctcgatatggccaaagtttctgcc
ctactgacgcgcgacaaacgcgtgaagctcgacactgccgacccgaaacgcataaatctc
gacataccgcagcagccgcaactggctttttttcgtgagctatccgccattctgaaatat
ctggcgaacagctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (18)   
   KEGG ORTHOLOGY (1)   
   RefGene (15)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (35)   

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