LinkDB: A0A061FYU0_THECC A0A061G4V1_THECC A0A061FYC1_THECC
Original site: A0A061FYU0_THECC A0A061G4V1_THECC A0A061FYC1_THECC
ID A0A061FYU0_THECC Unreviewed; 659 AA.
AC A0A061FYU0;
DT 03-SEP-2014, integrated into UniProtKB/TrEMBL.
DT 03-SEP-2014, sequence version 1.
DT 27-MAR-2024, entry version 45.
DE SubName: Full=Histone deacetylase 5 isoform 1 {ECO:0000313|EMBL:EOY22062.1};
GN ORFNames=TCM_014256 {ECO:0000313|EMBL:EOY22062.1};
OS Theobroma cacao (Cacao) (Cocoa).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma.
OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY22062.1, ECO:0000313|Proteomes:UP000026915};
RN [1] {ECO:0000313|EMBL:EOY22062.1, ECO:0000313|Proteomes:UP000026915}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Matina 1-6 {ECO:0000313|Proteomes:UP000026915};
RX PubMed=23731509; DOI=10.1186/gb-2013-14-6-r53;
RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L.,
RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C.,
RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., Feltus F.A.,
RA Mustiga G.M., Amores F., Phillips W., Marelli J.P., May G.D., Shapiro H.,
RA Ma J., Bustamante C.D., Schnell R.J., Main D., Gilbert D., Parida L.,
RA Kuhn D.N.;
RT "The genome sequence of the most widely cultivated cacao type and its use
RT to identify candidate genes regulating pod color.";
RL Genome Biol. 14:R53.1-R53.24(2013).
CC -!- COFACTOR:
CC Name=Zn(2+); Xref=ChEBI:CHEBI:29105;
CC Evidence={ECO:0000256|ARBA:ARBA00001947};
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
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DR EMBL; CM001881; EOY22062.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A061FYU0; -.
DR STRING; 3641.A0A061FYU0; -.
DR EnsemblPlants; EOY22062; EOY22062; TCM_014256.
DR Gramene; EOY22062; EOY22062; TCM_014256.
DR eggNOG; KOG1343; Eukaryota.
DR InParanoid; A0A061FYU0; -.
DR OMA; FYPAEGD; -.
DR Proteomes; UP000026915; Chromosome 3.
DR GO; GO:0005737; C:cytoplasm; IBA:GO_Central.
DR GO; GO:0000118; C:histone deacetylase complex; IBA:GO_Central.
DR GO; GO:0004407; F:histone deacetylase activity; IBA:GO_Central.
DR GO; GO:0000122; P:negative regulation of transcription by RNA polymerase II; IBA:GO_Central.
DR Gene3D; 3.10.490.10; Gamma-glutamyl cyclotransferase-like; 1.
DR Gene3D; 3.40.800.20; Histone deacetylase domain; 1.
DR InterPro; IPR000286; His_deacetylse.
DR InterPro; IPR023801; His_deacetylse_dom.
DR InterPro; IPR037138; His_deacetylse_dom_sf.
DR InterPro; IPR023696; Ureohydrolase_dom_sf.
DR PANTHER; PTHR10625:SF37; HISTONE DEACETYLASE 18-RELATED; 1.
DR PANTHER; PTHR10625; HISTONE DEACETYLASE HDAC1-RELATED; 1.
DR Pfam; PF00850; Hist_deacetyl; 1.
DR PRINTS; PR01270; HDASUPER.
DR SUPFAM; SSF52768; Arginase/deacetylase; 1.
PE 4: Predicted;
KW Chromatin regulator {ECO:0000256|ARBA:ARBA00022853};
KW Reference proteome {ECO:0000313|Proteomes:UP000026915};
KW Repressor {ECO:0000256|ARBA:ARBA00022491};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 37..337
FT /note="Histone deacetylase"
FT /evidence="ECO:0000259|Pfam:PF00850"
SQ SEQUENCE 659 AA; 73772 MW; 45ED8FA96D2FB73D CRC64;
MEVESAASNS NAKNQRRVGL IYDQRMCKHR TPDDDYHPEN PNRITVIWNR LKLAGIPERC
VLLNAKEAED KYICAVHSKK HVNLIRKISS KRYDSKRNLI ASKLNSIYFN EGSSEAAYLA
AGSVIEVAEK VAKGELDSAF ALVRPPGHHA EFDEAMGFCL FNNVAIAATF LLDERPELDI
NKILIVDWDV HHGNGTQKTF WKDPRVLFFS VHRHEFGSFY PANDDGFYTM VGEGPGAGYN
INVPWENGQC GDADYLAVWD HILLPVAKEF KPDVIIISAG FDAAVGDPLG GCRVTPYGYS
VMLKELMDFA QGRIVLALEG GYNLDSIANS ALACMEVLLE DKPISGFSEA YPFESTWRVI
QAVRRKLSAF WPTLAHELPT KLTNQKAPPH ILPLSSESDD EDDEASKIVS ADFVAAVEDV
VEPLLKLKVE DNHDKVTTAS TLWRSELSKS DIWYATFGSN MWKSRFLCYI EGGQVEGMKK
SCSGSMDRNP PKDILWKTCP HRLFFGRDFT QTWGPGGVAF LHPQSNSHNK TYMCLYRITL
EQFNDVLLQE NGPDHDLSSP LFDLNALNSI PNEGSFSVEA VKRGWYHSVV YLGKENDIPI
LTMTCPLSTI EKFKSGEIPL RAPCKEYADT LVRGLVEGNQ LSEEEARTYI HEASAKTII
//
ID A0A061G4V1_THECC Unreviewed; 588 AA.
AC A0A061G4V1;
DT 03-SEP-2014, integrated into UniProtKB/TrEMBL.
DT 03-SEP-2014, sequence version 1.
DT 27-MAR-2024, entry version 41.
DE SubName: Full=Histone deacetylase 5 isoform 3 {ECO:0000313|EMBL:EOY22064.1};
GN ORFNames=TCM_014256 {ECO:0000313|EMBL:EOY22064.1};
OS Theobroma cacao (Cacao) (Cocoa).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma.
OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY22064.1, ECO:0000313|Proteomes:UP000026915};
RN [1] {ECO:0000313|EMBL:EOY22064.1, ECO:0000313|Proteomes:UP000026915}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Matina 1-6 {ECO:0000313|Proteomes:UP000026915};
RX PubMed=23731509; DOI=10.1186/gb-2013-14-6-r53;
RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L.,
RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C.,
RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., Feltus F.A.,
RA Mustiga G.M., Amores F., Phillips W., Marelli J.P., May G.D., Shapiro H.,
RA Ma J., Bustamante C.D., Schnell R.J., Main D., Gilbert D., Parida L.,
RA Kuhn D.N.;
RT "The genome sequence of the most widely cultivated cacao type and its use
RT to identify candidate genes regulating pod color.";
RL Genome Biol. 14:R53.1-R53.24(2013).
CC -!- COFACTOR:
CC Name=Zn(2+); Xref=ChEBI:CHEBI:29105;
CC Evidence={ECO:0000256|ARBA:ARBA00001947};
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; CM001881; EOY22064.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A061G4V1; -.
DR EnsemblPlants; EOY22064; EOY22064; TCM_014256.
DR Gramene; EOY22064; EOY22064; TCM_014256.
DR HOGENOM; CLU_019490_1_0_1; -.
DR Proteomes; UP000026915; Chromosome 3.
DR GO; GO:0004407; F:histone deacetylase activity; IEA:UniProtKB-EC.
DR Gene3D; 3.10.490.10; Gamma-glutamyl cyclotransferase-like; 1.
DR Gene3D; 3.40.800.20; Histone deacetylase domain; 1.
DR InterPro; IPR000286; His_deacetylse.
DR InterPro; IPR023801; His_deacetylse_dom.
DR InterPro; IPR037138; His_deacetylse_dom_sf.
DR InterPro; IPR023696; Ureohydrolase_dom_sf.
DR PANTHER; PTHR10625:SF37; HISTONE DEACETYLASE 18-RELATED; 1.
DR PANTHER; PTHR10625; HISTONE DEACETYLASE HDAC1-RELATED; 1.
DR Pfam; PF00850; Hist_deacetyl; 1.
DR PRINTS; PR01270; HDASUPER.
DR SUPFAM; SSF52768; Arginase/deacetylase; 1.
PE 4: Predicted;
KW Chromatin regulator {ECO:0000256|ARBA:ARBA00022853};
KW Reference proteome {ECO:0000313|Proteomes:UP000026915};
KW Repressor {ECO:0000256|ARBA:ARBA00022491};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 37..337
FT /note="Histone deacetylase"
FT /evidence="ECO:0000259|Pfam:PF00850"
SQ SEQUENCE 588 AA; 65733 MW; 7789E5E15ED40C7B CRC64;
MEVESAASNS NAKNQRRVGL IYDQRMCKHR TPDDDYHPEN PNRITVIWNR LKLAGIPERC
VLLNAKEAED KYICAVHSKK HVNLIRKISS KRYDSKRNLI ASKLNSIYFN EGSSEAAYLA
AGSVIEVAEK VAKGELDSAF ALVRPPGHHA EFDEAMGFCL FNNVAIAATF LLDERPELDI
NKILIVDWDV HHGNGTQKTF WKDPRVLFFS VHRHEFGSFY PANDDGFYTM VGEGPGAGYN
INVPWENGQC GDADYLAVWD HILLPVAKEF KPDVIIISAG FDAAVGDPLG GCRVTPYGYS
VMLKELMDFA QGRIVLALEG GYNLDSIANS ALACMEVLLE DKPISGFSEA YPFESTWRVI
QAVRRKLSAF WPTLAHELPT KLTNQKAPPH ILPLSSESDD EDDEASKIVS ADFVAAVEDV
VEPLLKLKVE DNHDKVTTAS TLWRSELSKS DIWYATFGSN MWKSRFLCYI EGGQVEGMKK
SCSGSMDRNP PKDILWKTCP HRLFFGRDFT QTWGPGGVAF LHPQSNSHNK TYMCLYRITL
EQFNDVLLQE NGPDHDLSSP LFDLNALNSI PNEGSFSVEA VKVSPLND
//
ID A0A061FYC1_THECC Unreviewed; 638 AA.
AC A0A061FYC1;
DT 03-SEP-2014, integrated into UniProtKB/TrEMBL.
DT 03-SEP-2014, sequence version 1.
DT 27-MAR-2024, entry version 41.
DE SubName: Full=Histone deacetylase 5 isoform 2 {ECO:0000313|EMBL:EOY22063.1};
GN ORFNames=TCM_014256 {ECO:0000313|EMBL:EOY22063.1};
OS Theobroma cacao (Cacao) (Cocoa).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma.
OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY22063.1, ECO:0000313|Proteomes:UP000026915};
RN [1] {ECO:0000313|EMBL:EOY22063.1, ECO:0000313|Proteomes:UP000026915}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Matina 1-6 {ECO:0000313|Proteomes:UP000026915};
RX PubMed=23731509; DOI=10.1186/gb-2013-14-6-r53;
RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L.,
RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C.,
RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., Feltus F.A.,
RA Mustiga G.M., Amores F., Phillips W., Marelli J.P., May G.D., Shapiro H.,
RA Ma J., Bustamante C.D., Schnell R.J., Main D., Gilbert D., Parida L.,
RA Kuhn D.N.;
RT "The genome sequence of the most widely cultivated cacao type and its use
RT to identify candidate genes regulating pod color.";
RL Genome Biol. 14:R53.1-R53.24(2013).
CC -!- COFACTOR:
CC Name=Zn(2+); Xref=ChEBI:CHEBI:29105;
CC Evidence={ECO:0000256|ARBA:ARBA00001947};
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; CM001881; EOY22063.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A061FYC1; -.
DR EnsemblPlants; EOY22063; EOY22063; TCM_014256.
DR Gramene; EOY22063; EOY22063; TCM_014256.
DR Proteomes; UP000026915; Chromosome 3.
DR GO; GO:0004407; F:histone deacetylase activity; IEA:UniProtKB-EC.
DR Gene3D; 3.10.490.10; Gamma-glutamyl cyclotransferase-like; 1.
DR Gene3D; 3.40.800.20; Histone deacetylase domain; 1.
DR InterPro; IPR000286; His_deacetylse.
DR InterPro; IPR023801; His_deacetylse_dom.
DR InterPro; IPR037138; His_deacetylse_dom_sf.
DR InterPro; IPR023696; Ureohydrolase_dom_sf.
DR PANTHER; PTHR10625:SF37; HISTONE DEACETYLASE 18-RELATED; 1.
DR PANTHER; PTHR10625; HISTONE DEACETYLASE HDAC1-RELATED; 1.
DR Pfam; PF00850; Hist_deacetyl; 1.
DR PRINTS; PR01270; HDASUPER.
DR SUPFAM; SSF52768; Arginase/deacetylase; 1.
PE 4: Predicted;
KW Chromatin regulator {ECO:0000256|ARBA:ARBA00022853};
KW Reference proteome {ECO:0000313|Proteomes:UP000026915};
KW Repressor {ECO:0000256|ARBA:ARBA00022491};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 37..337
FT /note="Histone deacetylase"
FT /evidence="ECO:0000259|Pfam:PF00850"
SQ SEQUENCE 638 AA; 71805 MW; FC70AD9000E25A11 CRC64;
MEVESAASNS NAKNQRRVGL IYDQRMCKHR TPDDDYHPEN PNRITVIWNR LKLAGIPERC
VLLNAKEAED KYICAVHSKK HVNLIRKISS KRYDSKRNLI ASKLNSIYFN EGSSEAAYLA
AGSVIEVAEK VAKGELDSAF ALVRPPGHHA EFDEAMGFCL FNNVAIAATF LLDERPELDI
NKILIVDWDV HHGNGTQKTF WKDPRVLFFS VHRHEFGSFY PANDDGFYTM VGEGPGAGYN
INVPWENGQC GDADYLAVWD HILLPVAKEF KPDVIIISAG FDAAVGDPLG GCRVTPYGYS
VMLKELMDFA QGRIVLALEG GYNLDSIANS ALACMEVLLE DKPISGFSEA YPFESTWRVI
QAVRRKLSAF WPTLAHELPT KLTNQKAPPH ILPLSSESDD EDDEASKIVS ADFVAAVEDV
VEPLLKLKVE DNHDKVTTAS TLWRSELSKS DIWYATFGSN MWKSRFLCYI EGGQVEGMKK
SCSGSMDRNP PKDILWKTCP HRLFFGRDFT QTWGPGGVAF LHPQSNSHNK TYMCLYRITL
EQFNDVLLQE NGPDHDLSSP LFDLNALNSI PNEGSFSVEA VKRGWYHSVV YLGKENDIPI
LTMTYALMHS WQLNFFFIQN RIGHLHNLHL VSLPYLCI
//