ID A0A0H3NCT9_SALTS Unreviewed; 494 AA.
AC A0A0H3NCT9;
DT 16-SEP-2015, integrated into UniProtKB/TrEMBL.
DT 16-SEP-2015, sequence version 1.
DT 24-JAN-2024, entry version 33.
DE SubName: Full=Alpha-amylase {ECO:0000313|EMBL:CBW17987.1, ECO:0000313|EMBL:HAD6469916.1};
DE EC=3.2.1.1 {ECO:0000313|EMBL:HAD6469916.1};
GN Name=amyA {ECO:0000313|EMBL:CBW17987.1};
GN OrderedLocusNames=SL1344_1892 {ECO:0000313|EMBL:CBW17987.1};
GN ORFNames=G1W50_07905 {ECO:0000313|EMBL:HAD6469916.1}, G1W53_11760
GN {ECO:0000313|EMBL:HAD6531437.1}, G1W54_12145
GN {ECO:0000313|EMBL:HAD6475521.1}, G1W56_12650
GN {ECO:0000313|EMBL:HAD6536478.1}, G1W63_12455
GN {ECO:0000313|EMBL:HAD6498721.1}, G1W64_12470
GN {ECO:0000313|EMBL:HAD6555044.1}, G1W86_11055
GN {ECO:0000313|EMBL:HAD6645713.1}, G1W87_22255
GN {ECO:0000313|EMBL:HAD6652650.1}, G1W89_11945
GN {ECO:0000313|EMBL:HAD6772430.1}, G1W92_18005
GN {ECO:0000313|EMBL:HAD6670892.1}, G1X03_12335
GN {ECO:0000313|EMBL:HAD6720914.1}, G1X04_07245
GN {ECO:0000313|EMBL:HAD6790199.1}, G1X09_12795
GN {ECO:0000313|EMBL:HAD6702145.1}, G1X10_12710
GN {ECO:0000313|EMBL:HAD6707053.1}, G1X13_12790
GN {ECO:0000313|EMBL:HAD6801015.1}, G1X17_12800
GN {ECO:0000313|EMBL:HAD6814981.1}, G1X23_12695
GN {ECO:0000313|EMBL:HAD6886764.1}, G1X29_14065
GN {ECO:0000313|EMBL:HAD7020266.1}, G1X32_11850
GN {ECO:0000313|EMBL:HAD6819776.1}, G1X38_12155
GN {ECO:0000313|EMBL:HAD6923618.1}, G1X42_18010
GN {ECO:0000313|EMBL:HAD7006449.1}, G1X47_11160
GN {ECO:0000313|EMBL:HAD6833695.1}, G1X49_12350
GN {ECO:0000313|EMBL:HAD6848464.1}, G1X51_12795
GN {ECO:0000313|EMBL:HAD7015210.1}, G1X52_12475
GN {ECO:0000313|EMBL:HAD7024715.1}, G1X66_12155
GN {ECO:0000313|EMBL:HAD6928428.1}, G1X68_11240
GN {ECO:0000313|EMBL:HAD7069571.1}, G1X69_13065
GN {ECO:0000313|EMBL:HAD6995903.1}, G1X71_12800
GN {ECO:0000313|EMBL:HAD7065065.1}, G1X76_11825
GN {ECO:0000313|EMBL:HAD7118510.1}, G1X80_11825
GN {ECO:0000313|EMBL:HAD6947854.1}, G1X84_19610
GN {ECO:0000313|EMBL:HAD7105267.1}, G1X85_22630
GN {ECO:0000313|EMBL:HAD7153872.1}, G1X86_11255
GN {ECO:0000313|EMBL:HAD7156503.1}, G1X94_11680
GN {ECO:0000313|EMBL:HAD7137684.1}, G1X96_11260
GN {ECO:0000313|EMBL:HAD7175207.1}, G1X99_12485
GN {ECO:0000313|EMBL:HAD7142653.1}, G1Y02_11855
GN {ECO:0000313|EMBL:HAD7197934.1};
OS Salmonella typhimurium (strain SL1344).
OC Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
OC Enterobacteriaceae; Salmonella.
OX NCBI_TaxID=216597 {ECO:0000313|EMBL:CBW17987.1, ECO:0000313|Proteomes:UP000008962};
RN [1] {ECO:0000313|EMBL:CBW17987.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=SL1344 {ECO:0000313|EMBL:CBW17987.1};
RA Aslett M.;
RL Submitted (JUL-2010) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|EMBL:CBW17987.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=SL1344 {ECO:0000313|EMBL:CBW17987.1};
RA Kroger C., Dillon S.C., Cameron A.D., Papenfort K., Sivasankaran S.K.,
RA Hokamp K., Chao Y., Sittka A., Hebrard M., Handler K., Colgan A.,
RA Leekitcharoenphon P., Langridge G.C., Lohan A.J., Loftus B., Lucchini S.,
RA Ussery D.W., Dorman C.J., Thomson N.R., Vogel J., Hinton J.C.D.;
RT "The transcriptional architecture of the model pathogen Salmonella enterica
RT serovar Typhimurium.";
RL Proc. Natl. Acad. Sci. U.S.A. 109:e1277-e1286(2012).
RN [3] {ECO:0000313|Proteomes:UP000008962}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=SL1344 {ECO:0000313|Proteomes:UP000008962};
RX PubMed=22538806; DOI=10.1073/pnas.1201061109;
RA Kroger C., Dillon S.C., Cameron A.D., Papenfort K., Sivasankaran S.K.,
RA Hokamp K., Chao Y., Sittka A., Hebrard M., Handler K., Colgan A.,
RA Leekitcharoenphon P., Langridge G.C., Lohan A.J., Loftus B., Lucchini S.,
RA Ussery D.W., Dorman C.J., Thomson N.R., Vogel J., Hinton J.C.;
RT "The transcriptional landscape and small RNAs of Salmonella enterica
RT serovar Typhimurium.";
RL Proc. Natl. Acad. Sci. U.S.A. 109:E1277-E1286(2012).
RN [4] {ECO:0000313|EMBL:HAD6469916.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=SL1344 {ECO:0000313|EMBL:HAD6469916.1};
RX PubMed=30286803;
RA Souvorov A., Agarwala R., Lipman D.J.;
RT "SKESA: strategic k-mer extension for scrupulous assemblies.";
RL Genome Biol. 19:153-153(2018).
RN [5] {ECO:0000313|EMBL:HAD6469916.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=SL1344 {ECO:0000313|EMBL:HAD6469916.1};
RG NCBI Pathogen Detection Project;
RL Submitted (JAN-2019) to the EMBL/GenBank/DDBJ databases.
CC -!- COFACTOR:
CC Name=Ca(2+); Xref=ChEBI:CHEBI:29108;
CC Evidence={ECO:0000256|ARBA:ARBA00001913};
CC -!- SIMILARITY: Belongs to the glycosyl hydrolase 13 family.
CC {ECO:0000256|ARBA:ARBA00008061}.
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DR EMBL; FQ312003; CBW17987.1; -; Genomic_DNA.
DR EMBL; DAAPJV010000004; HAD6469916.1; -; Genomic_DNA.
DR EMBL; DAAPJU010000005; HAD6475521.1; -; Genomic_DNA.
DR EMBL; DAAPKC010000005; HAD6498721.1; -; Genomic_DNA.
DR EMBL; DAAPJY010000005; HAD6531437.1; -; Genomic_DNA.
DR EMBL; DAAPKB010000005; HAD6536478.1; -; Genomic_DNA.
DR EMBL; DAAPKJ010000005; HAD6555044.1; -; Genomic_DNA.
DR EMBL; DAAPLB010000005; HAD6645713.1; -; Genomic_DNA.
DR EMBL; DAAPLE010000021; HAD6652650.1; -; Genomic_DNA.
DR EMBL; DAAPLI010000014; HAD6670892.1; -; Genomic_DNA.
DR EMBL; DAAPLQ010000005; HAD6702145.1; -; Genomic_DNA.
DR EMBL; DAAPLP010000005; HAD6707053.1; -; Genomic_DNA.
DR EMBL; DAAPLU010000005; HAD6720914.1; -; Genomic_DNA.
DR EMBL; DAAPMD010000005; HAD6772430.1; -; Genomic_DNA.
DR EMBL; DAAPMH010000008; HAD6790199.1; -; Genomic_DNA.
DR EMBL; DAAPMK010000005; HAD6801015.1; -; Genomic_DNA.
DR EMBL; DAAPMO010000005; HAD6814981.1; -; Genomic_DNA.
DR EMBL; DAAPMN010000005; HAD6819776.1; -; Genomic_DNA.
DR EMBL; DAAPMQ010000005; HAD6833695.1; -; Genomic_DNA.
DR EMBL; DAAPMX010000005; HAD6848464.1; -; Genomic_DNA.
DR EMBL; DAAPNC010000005; HAD6886764.1; -; Genomic_DNA.
DR EMBL; DAAPNQ010000005; HAD6923618.1; -; Genomic_DNA.
DR EMBL; DAAPOO010000005; HAD6928428.1; -; Genomic_DNA.
DR EMBL; DAAPOY010000005; HAD6947854.1; -; Genomic_DNA.
DR EMBL; DAAPOS010000005; HAD6995903.1; -; Genomic_DNA.
DR EMBL; DAAPNK010000014; HAD7006449.1; -; Genomic_DNA.
DR EMBL; DAAPNY010000005; HAD7015210.1; -; Genomic_DNA.
DR EMBL; DAAPNL010000006; HAD7020266.1; -; Genomic_DNA.
DR EMBL; DAAPNV010000005; HAD7024715.1; -; Genomic_DNA.
DR EMBL; DAAPOD010000005; HAD7065065.1; -; Genomic_DNA.
DR EMBL; DAAPNZ010000005; HAD7069571.1; -; Genomic_DNA.
DR EMBL; DAAPOZ010000015; HAD7105267.1; -; Genomic_DNA.
DR EMBL; DAAPOK010000005; HAD7118510.1; -; Genomic_DNA.
DR EMBL; DAAPPD010000005; HAD7137684.1; -; Genomic_DNA.
DR EMBL; DAAPPE010000005; HAD7142653.1; -; Genomic_DNA.
DR EMBL; DAAPPG010000021; HAD7153872.1; -; Genomic_DNA.
DR EMBL; DAAPPH010000005; HAD7156503.1; -; Genomic_DNA.
DR EMBL; DAAPPQ010000005; HAD7175207.1; -; Genomic_DNA.
DR EMBL; DAAPPU010000005; HAD7197934.1; -; Genomic_DNA.
DR RefSeq; WP_000795487.1; NZ_QASL01000003.1.
DR AlphaFoldDB; A0A0H3NCT9; -.
DR SMR; A0A0H3NCT9; -.
DR KEGG; sey:SL1344_1892; -.
DR PATRIC; fig|216597.6.peg.2103; -.
DR HOGENOM; CLU_024572_2_0_6; -.
DR OMA; FFHWYYP; -.
DR BioCyc; SENT216597:SL1344_RS09820-MONOMER; -.
DR Proteomes; UP000008962; Chromosome.
DR GO; GO:0004556; F:alpha-amylase activity; IEA:UniProtKB-EC.
DR GO; GO:0005509; F:calcium ion binding; IEA:InterPro.
DR GO; GO:0005975; P:carbohydrate metabolic process; IEA:InterPro.
DR CDD; cd11318; AmyAc_bac_fung_AmyA; 1.
DR Gene3D; 2.40.30.140; -; 1.
DR Gene3D; 3.20.20.80; Glycosidases; 1.
DR Gene3D; 2.60.40.1180; Golgi alpha-mannosidase II; 1.
DR InterPro; IPR013776; A-amylase_thermo.
DR InterPro; IPR006047; Glyco_hydro_13_cat_dom.
DR InterPro; IPR013780; Glyco_hydro_b.
DR InterPro; IPR017853; Glycoside_hydrolase_SF.
DR PANTHER; PTHR43447; ALPHA-AMYLASE; 1.
DR PANTHER; PTHR43447:SF7; ALPHA-AMYLASE 2-RELATED; 1.
DR Pfam; PF00128; Alpha-amylase; 1.
DR PIRSF; PIRSF001021; Alph-amls_thrmst; 1.
DR SMART; SM00642; Aamy; 1.
DR SUPFAM; SSF51445; (Trans)glycosidases; 1.
DR SUPFAM; SSF51011; Glycosyl hydrolase domain; 1.
PE 3: Inferred from homology;
KW Calcium {ECO:0000256|PIRSR:PIRSR001021-2};
KW Glycosidase {ECO:0000313|EMBL:HAD6469916.1};
KW Hydrolase {ECO:0000313|EMBL:HAD6469916.1};
KW Metal-binding {ECO:0000256|PIRSR:PIRSR001021-2}.
FT DOMAIN 4..402
FT /note="Glycosyl hydrolase family 13 catalytic"
FT /evidence="ECO:0000259|SMART:SM00642"
FT ACT_SITE 235
FT /note="Nucleophile"
FT /evidence="ECO:0000256|PIRSR:PIRSR001021-1"
FT ACT_SITE 265
FT /note="Proton donor"
FT /evidence="ECO:0000256|PIRSR:PIRSR001021-1"
FT BINDING 104
FT /ligand="Ca(2+)"
FT /ligand_id="ChEBI:CHEBI:29108"
FT /ligand_label="1"
FT /evidence="ECO:0000256|PIRSR:PIRSR001021-2"
FT BINDING 198
FT /ligand="Ca(2+)"
FT /ligand_id="ChEBI:CHEBI:29108"
FT /ligand_label="1"
FT /evidence="ECO:0000256|PIRSR:PIRSR001021-2"
FT BINDING 206
FT /ligand="Ca(2+)"
FT /ligand_id="ChEBI:CHEBI:29108"
FT /ligand_label="2"
FT /evidence="ECO:0000256|PIRSR:PIRSR001021-2"
FT BINDING 239
FT /ligand="Ca(2+)"
FT /ligand_id="ChEBI:CHEBI:29108"
FT /ligand_label="1"
FT /evidence="ECO:0000256|PIRSR:PIRSR001021-2"
SQ SEQUENCE 494 AA; 56522 MW; 5C1E862FEDD5E47C CRC64;
MKNPTLLQYF HWYYPDGGKL WSELAERADG LNDIGINMVW LPPACKGASG GYSVGYDTYD
LFDLGEFDQK GTIATKYGDK RQLLTAIDAL KKNNIAVLLD VVVNHKMGAD EKERIRVQRV
NQDDRTQIDD NIIECEGWTR YTFPARAGQY SNFIWDYHCF SGIDHIENPD EDGIFKIVND
YTGDGWNDQV DDEMGNFDYL MGENIDFRNH AVTEEIKYWA RWVMEQTHCD GFRLDAVKHI
PAWFYKEWIE HVQAVAPKPL FIVAEYWSHE VDKLQTYIDQ VDGKTMLFDA PLQMKFHEAS
RQGAEYDMRH IFTGTLVEAD PFHAVTLVAN HDTQPLQALE APVEPWFKPL AYALILLREN
GVPSVFYPDL YGASYEDSGE NGETCRVDMP VINQLDRLIL ARQRFAHGIQ TLFFDHPNCI
AFSRSGTEEN PGCVVVLSNG DDGEKTLLLG DNYANKTWRD FLGNRDEYVV TNDQGEATFF
CNAGSVSVWV IEDV
//