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Database: UniProt/TrEMBL
Entry: A0A0K2GDN5_9BACT
LinkDB: A0A0K2GDN5_9BACT
Original site: A0A0K2GDN5_9BACT 
ID   A0A0K2GDN5_9BACT        Unreviewed;       895 AA.
AC   A0A0K2GDN5;
DT   11-NOV-2015, integrated into UniProtKB/TrEMBL.
DT   11-NOV-2015, sequence version 1.
DT   07-JUN-2017, entry version 12.
DE   SubName: Full=DNA ligase D {ECO:0000313|EMBL:ALA59070.1};
DE            EC=6.5.1.1 {ECO:0000313|EMBL:ALA59070.1};
GN   Name=ykoU {ECO:0000313|EMBL:ALA59070.1};
GN   ORFNames=NITMOv2_2657 {ECO:0000313|EMBL:ALA59070.1};
OS   Nitrospira moscoviensis.
OC   Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.
OX   NCBI_TaxID=42253 {ECO:0000313|EMBL:ALA59070.1, ECO:0000313|Proteomes:UP000069205};
RN   [1] {ECO:0000313|EMBL:ALA59070.1, ECO:0000313|Proteomes:UP000069205}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=NSP M-1 {ECO:0000313|EMBL:ALA59070.1,
RC   ECO:0000313|Proteomes:UP000069205};
RX   PubMed=26305944; DOI=10.1073/pnas.1506533112;
RA   Koch H., Lucker S., Albertsen M., Kitzinger K., Herbold C., Spieck E.,
RA   Nielsen P.H., Wagner M., Daims H.;
RT   "Expanded metabolic versatility of ubiquitous nitrite-oxidizing
RT   bacteria from the genus Nitrospira.";
RL   Proc. Natl. Acad. Sci. U.S.A. 112:11371-11376(2015).
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DR   EMBL; CP011801; ALA59070.1; -; Genomic_DNA.
DR   RefSeq; WP_053380148.1; NZ_CP011801.1.
DR   EnsemblBacteria; ALA59070; ALA59070; NITMOv2_2657.
DR   KEGG; nmv:NITMOv2_2657; -.
DR   PATRIC; fig|42253.5.peg.2628; -.
DR   KO; K01971; -.
DR   Proteomes; UP000069205; Chromosome.
DR   GO; GO:0005524; F:ATP binding; IEA:InterPro.
DR   GO; GO:0003910; F:DNA ligase (ATP) activity; IEA:UniProtKB-EC.
DR   GO; GO:0006310; P:DNA recombination; IEA:InterPro.
DR   GO; GO:0006281; P:DNA repair; IEA:InterPro.
DR   CDD; cd04862; PaeLigD_Pol_like; 1.
DR   InterPro; IPR012309; DNA_ligase_ATP-dep_C.
DR   InterPro; IPR012310; DNA_ligase_ATP-dep_cent.
DR   InterPro; IPR014146; LigD_ligase_dom.
DR   InterPro; IPR014144; LigD_PE_domain.
DR   InterPro; IPR014145; LigD_pol_dom.
DR   InterPro; IPR012340; NA-bd_OB-fold.
DR   InterPro; IPR014143; NHEJ_ligase_prk.
DR   InterPro; IPR033651; PaeLigD_Pol-like.
DR   Pfam; PF04679; DNA_ligase_A_C; 1.
DR   Pfam; PF01068; DNA_ligase_A_M; 1.
DR   Pfam; PF13298; LigD_N; 1.
DR   SUPFAM; SSF50249; SSF50249; 1.
DR   TIGRFAMs; TIGR02777; LigD_PE_dom; 1.
DR   TIGRFAMs; TIGR02778; ligD_pol; 1.
DR   TIGRFAMs; TIGR02779; NHEJ_ligase_lig; 1.
DR   TIGRFAMs; TIGR02776; NHEJ_ligase_prk; 1.
DR   PROSITE; PS50160; DNA_LIGASE_A3; 1.
PE   4: Predicted;
KW   Complete proteome {ECO:0000313|Proteomes:UP000069205};
KW   Ligase {ECO:0000313|EMBL:ALA59070.1};
KW   Reference proteome {ECO:0000313|Proteomes:UP000069205}.
FT   DOMAIN      362    488       DNA_LIGASE_A3. {ECO:0000259|PROSITE:
FT                                PS50160}.
SQ   SEQUENCE   895 AA;  99668 MW;  2C228FD81C45452A CRC64;
     MPRPATNDLD RYRRKRDFQR TPEPSGRLAR QAVAAPAGRP LFVVQKHAAS RLHYDFRLEL
     DGTLKSWAVP KGPSLDPAQK RLAVHVEDHP LEYAEFEGVI PPKQYGAGTV LVWDRGTWEP
     LSDPREGYRR GVLKFRLRGE KLHGGWTLVR MHRRGGEDED NWLLIKERDA DAKSGPAGEI
     VETLPDSVAS GRGIEQVKGA RARVWQSNRS SALSRQPPPA LSAPPSGRGT RHLPFATHHA
     SRITLHPASV PGAVKRACPD WIAPQLASLV NGMPAGEGWL HEIKYDGYRI VSRVERGTAR
     LYSRNRNDWT SRLRPQAEAL AALGLDEAWL DGEVVVLDAG GKPDFQALQN AFDLEAPRPI
     VYCLFDLMYL NGYDLRGAPL AERKRLLAAL LPDGRDGATL RYSDHLVDRG REVFVEACRS
     GLEGVIAKRA DASYRSGRGS SWLKIKCERR QEFVIGGYTD PSGSRHGFGA LLVGYYDGDE
     LRYAGKVGTG FSETSLRELS ARLTRLTQRR PPFVNPPSGS EARGVHYVRP QLVAEVRFAE
     WTQEGILRQP SFQGLRQDKP ARAIGREWPQ EEQGDSNGGT RGSNGGKGGK GDNGGTRGNR
     REQGTTVRLS HPDRVLYPDM GLTKEGLARY YEAVAEWIVP HLRGRPLTLV RCPEGYQDCF
     YQKHINETVP KAIQRIEIEE DDGIGTYMIA DSLEAVLGLV QMGVLELHTW GATRDRLEQP
     DRLTFDLDPD PSVPWEQVIE AAQLTRTLLD ELGLVSFVKT TGGKGLHLVT PIERTCAWDE
     AKAFAKSVAD HMARTIPQRF TANMAKRARK GKIFIDYLRN ARGATAIAAY STRAKPGAPV
     SVPLAWDELS PELKSDSFTV TNVPGRLKSL RADPWEGYRD ATRRITERMK RRLAP
//
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