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Database: UniProt/TrEMBL
Entry: A0A0U4VN59_9PSED
LinkDB: A0A0U4VN59_9PSED
Original site: A0A0U4VN59_9PSED 
ID   A0A0U4VN59_9PSED        Unreviewed;       858 AA.
AC   A0A0U4VN59;
DT   16-MAR-2016, integrated into UniProtKB/TrEMBL.
DT   16-MAR-2016, sequence version 1.
DT   07-JUN-2017, entry version 10.
DE   SubName: Full=ATP-dependent DNA ligase {ECO:0000313|EMBL:ALZ84571.1};
GN   Name=ligD {ECO:0000313|EMBL:ALZ84571.1};
GN   ORFNames=APT59_10325 {ECO:0000313|EMBL:ALZ84571.1};
OS   Pseudomonas oryzihabitans.
OC   Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales;
OC   Pseudomonadaceae; Pseudomonas.
OX   NCBI_TaxID=47885 {ECO:0000313|EMBL:ALZ84571.1, ECO:0000313|Proteomes:UP000064137};
RN   [1] {ECO:0000313|EMBL:ALZ84571.1, ECO:0000313|Proteomes:UP000064137}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=USDA-ARS-USMARC-56511 {ECO:0000313|EMBL:ALZ84571.1,
RC   ECO:0000313|Proteomes:UP000064137};
RA   Harhay G.P., Harhay D.M., Smith T.P.L., Bono J.L., Heaton M.P.,
RA   Clawson M.L., Chitko-Mckown C.G., Capik S.F., DeDonder K.D.,
RA   Apley M.D., Lubbers B.V., White B.J., Larson R.L.;
RT   "Annotation of Pseudomonas oryzihabitans USDA-ARS-USMARC-56511.";
RL   Submitted (JAN-2016) to the EMBL/GenBank/DDBJ databases.
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DR   EMBL; CP013987; ALZ84571.1; -; Genomic_DNA.
DR   RefSeq; WP_059314762.1; NZ_CP013987.1.
DR   EnsemblBacteria; ALZ84571; ALZ84571; APT59_10325.
DR   GeneID; 29478716; -.
DR   KEGG; por:APT59_10325; -.
DR   KO; K01971; -.
DR   Proteomes; UP000064137; Chromosome.
DR   GO; GO:0005524; F:ATP binding; IEA:InterPro.
DR   GO; GO:0003910; F:DNA ligase (ATP) activity; IEA:InterPro.
DR   GO; GO:0006310; P:DNA recombination; IEA:InterPro.
DR   GO; GO:0006281; P:DNA repair; IEA:InterPro.
DR   CDD; cd04862; PaeLigD_Pol_like; 1.
DR   InterPro; IPR012309; DNA_ligase_ATP-dep_C.
DR   InterPro; IPR012310; DNA_ligase_ATP-dep_cent.
DR   InterPro; IPR014146; LigD_ligase_dom.
DR   InterPro; IPR014144; LigD_PE_domain.
DR   InterPro; IPR014145; LigD_pol_dom.
DR   InterPro; IPR012340; NA-bd_OB-fold.
DR   InterPro; IPR014143; NHEJ_ligase_prk.
DR   InterPro; IPR033651; PaeLigD_Pol-like.
DR   Pfam; PF04679; DNA_ligase_A_C; 1.
DR   Pfam; PF01068; DNA_ligase_A_M; 1.
DR   Pfam; PF13298; LigD_N; 1.
DR   SUPFAM; SSF50249; SSF50249; 1.
DR   TIGRFAMs; TIGR02777; LigD_PE_dom; 1.
DR   TIGRFAMs; TIGR02778; ligD_pol; 1.
DR   TIGRFAMs; TIGR02779; NHEJ_ligase_lig; 1.
DR   TIGRFAMs; TIGR02776; NHEJ_ligase_prk; 1.
DR   PROSITE; PS50160; DNA_LIGASE_A3; 1.
PE   4: Predicted;
KW   Complete proteome {ECO:0000313|Proteomes:UP000064137};
KW   Ligase {ECO:0000313|EMBL:ALZ84571.1};
KW   Reference proteome {ECO:0000313|Proteomes:UP000064137}.
FT   DOMAIN      320    413       DNA_LIGASE_A3. {ECO:0000259|PROSITE:
FT                                PS50160}.
SQ   SEQUENCE   858 AA;  95149 MW;  CC7EF63B55594D61 CRC64;
     MASSSSEYNR KRNFDITAEP RDEDSPRRRK AKGALSFVIQ KHDARRLHYD FRLELDGTLK
     SWAVPKGPSL DPGEKRLAVQ VEDHPIAYGG FEGSIPEGQY GAGDVIVWDR GEWQADGDPA
     QAYAAGKLKF ELRGEKLRGH WTLVRTRLRG HSDKPQWLLI KERDDQARET AEYDITVEAP
     DSVLSDKTLP RLAKGTKAKE AKASTQAASP KAPARKTTAK ARKADLPATL EAQLATLVDS
     PPAGDWLYEV KYDGYRLLAH IEGSAVSLFT RSGNDWTERL PDQAKALAAL GLDNAWLDGE
     IVVNDAHGVS SFQALQNAFE TGKDSRIAYY LFDLPYLNGA DLREVPVEQR RELLGKLLEN
     SNESDLLRFS AAFEVPADRI LASACELGLE GVIGKRLGSP YRSRRNKDWI KLKCAHRQEF
     IIVGYTPPKG GRQHLGALLV ALHDEQGALH YAGKVGTGFT AAMLKQLHAR FQPLMVERPP
     VVDPPKGAAY REVTWLKPEQ LCEIAYAEMT QDRIVRQGVF HGLREDKPAQ EIGLEEAAPA
     REAERSGPSS SSSRKSSRTS KDATVAGVRI SHPERVIDEA SGATKLDVAR YYEAVADWML
     PHLADRPVAL VRTPEGIAGE QIFQKHKQTL AIPHIRELDT ALDPGHAPLM VIDSRDALIG
     AAQMGSVEFH TWNATADRID RPDRFILDLD PDPALPWSRM VEATELVLTL LDELGLQAFV
     KTSGGRGLHL VVPLDRRQDW ETVKGFAQAA AQHLATTLPK LFAAKMGAQN RQGRIFVDYL
     RNRHGATTVS AFSLRARPHL GVSVPIARDE LSTLQASDQW RLDTLMQRLE GLKDDPWAGY
     AKVRQGLTRA RRERLGAD
//
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