ID A0A1B1U869_9BRAD Unreviewed; 336 AA.
AC A0A1B1U869;
DT 02-NOV-2016, integrated into UniProtKB/TrEMBL.
DT 02-NOV-2016, sequence version 1.
DT 27-MAR-2024, entry version 27.
DE RecName: Full=DNA ligase (ATP) {ECO:0000256|ARBA:ARBA00012727};
DE EC=6.5.1.1 {ECO:0000256|ARBA:ARBA00012727};
GN ORFNames=LMTR13_00590 {ECO:0000313|EMBL:ANV98902.1};
OS Bradyrhizobium icense.
OC Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
OC Nitrobacteraceae; Bradyrhizobium.
OX NCBI_TaxID=1274631 {ECO:0000313|EMBL:ANV98902.1, ECO:0000313|Proteomes:UP000092839};
RN [1] {ECO:0000313|EMBL:ANV98902.1, ECO:0000313|Proteomes:UP000092839}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=LMTR 13 {ECO:0000313|EMBL:ANV98902.1,
RC ECO:0000313|Proteomes:UP000092839};
RA Ormeno-Orrillo E., Duran D., Rogel M.A., Rey L., Imperial J.,
RA Ruiz-Argueso T., Martinez-Romero E.;
RT "Complete genome sequence of Bradyrhizobium icense LMTR 13T, a potential
RT inoculant strain isolated from lima bean (Phaseolus lunatus) in Peru.";
RL Submitted (JUL-2016) to the EMBL/GenBank/DDBJ databases.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=ATP + (deoxyribonucleotide)n-3'-hydroxyl + 5'-phospho-
CC (deoxyribonucleotide)m = (deoxyribonucleotide)n+m + AMP +
CC diphosphate.; EC=6.5.1.1; Evidence={ECO:0000256|ARBA:ARBA00034003};
CC -!- SIMILARITY: Belongs to the ATP-dependent DNA ligase family.
CC {ECO:0000256|ARBA:ARBA00007572}.
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DR EMBL; CP016428; ANV98902.1; -; Genomic_DNA.
DR RefSeq; WP_065726227.1; NZ_CP016428.1.
DR AlphaFoldDB; A0A1B1U869; -.
DR STRING; 1274631.LMTR13_00590; -.
DR KEGG; bic:LMTR13_00590; -.
DR OrthoDB; 9770771at2; -.
DR Proteomes; UP000092839; Chromosome.
DR GO; GO:0005524; F:ATP binding; IEA:InterPro.
DR GO; GO:0003910; F:DNA ligase (ATP) activity; IEA:UniProtKB-EC.
DR GO; GO:0006310; P:DNA recombination; IEA:InterPro.
DR GO; GO:0006281; P:DNA repair; IEA:InterPro.
DR CDD; cd07905; Adenylation_DNA_ligase_LigC; 1.
DR CDD; cd07970; OBF_DNA_ligase_LigC; 1.
DR Gene3D; 3.30.470.30; DNA ligase/mRNA capping enzyme; 1.
DR Gene3D; 2.40.50.140; Nucleic acid-binding proteins; 1.
DR InterPro; IPR044119; Adenylation_LigC-like.
DR InterPro; IPR012309; DNA_ligase_ATP-dep_C.
DR InterPro; IPR012310; DNA_ligase_ATP-dep_cent.
DR InterPro; IPR012340; NA-bd_OB-fold.
DR InterPro; IPR044117; OBF_LigC-like.
DR PANTHER; PTHR45674; DNA LIGASE 1/3 FAMILY MEMBER; 1.
DR PANTHER; PTHR45674:SF9; DNA LIGASE 3; 1.
DR Pfam; PF04679; DNA_ligase_A_C; 1.
DR Pfam; PF01068; DNA_ligase_A_M; 1.
DR SUPFAM; SSF56091; DNA ligase/mRNA capping enzyme, catalytic domain; 1.
DR SUPFAM; SSF50249; Nucleic acid-binding proteins; 1.
PE 3: Inferred from homology;
KW Ligase {ECO:0000256|ARBA:ARBA00022598, ECO:0000313|EMBL:ANV98902.1}.
FT DOMAIN 12..192
FT /note="ATP-dependent DNA ligase family profile"
FT /evidence="ECO:0000259|Pfam:PF01068"
FT DOMAIN 214..314
FT /note="DNA ligase ATP-dependent C-terminal"
FT /evidence="ECO:0000259|Pfam:PF04679"
SQ SEQUENCE 336 AA; 37415 MW; F33E8382E9509C7C CRC64;
MEARSVDVIP RGAEWQYEPK WDGFRCLLSR QGDLVDLRSK SGEDLARYFP ELVRAALALK
ATSFLLDGEI VVPHGKAFSF DDLLQRIHPA ASRVKKLSEE TPALFIAFDL LATAADKKLA
ASPLQMRRPA LEAFAKAQFK SSPTFRLSPV STSYTTAQKW LKQAGGGSDG VIAKRVDLPY
QAGNRDGMQK IKKFRSADCV VGGFRYATNK IANRRVVGSL LLGLYDDEGR LHHVGFTSAI
KQADRPALTY RLERLIAPPG FTGNAPGGLS RWSTERSAKW CPLKPKLVIE ICYDHFSGGR
FRHGTSILRW RPDKAPRQCT FDQLKQKAAD PIKLLK
//
