ID   A4YJK8_BRASO            Unreviewed;       546 AA.
AC   A4YJK8;
DT   29-MAY-2007, integrated into UniProtKB/TrEMBL.
DT   29-MAY-2007, sequence version 1.
DT   01-MAY-2013, entry version 37.
DE   RecName: Full=RNA polymerase sigma-54 factor;
GN   Name=rpoN; OrderedLocusNames=BRADO0113;
OS   Bradyrhizobium sp. (strain ORS278).
OC   Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales;
OC   Bradyrhizobiaceae; Bradyrhizobium.
OX   NCBI_TaxID=114615;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=ORS278;
RX   PubMed=17540897; DOI=10.1126/science.1139548;
RA   Giraud E., Moulin L., Vallenet D., Barbe V., Cytryn E., Avarre J.C.,
RA   Jaubert M., Simon D., Cartieaux F., Prin Y., Bena G., Hannibal L.,
RA   Fardoux J., Kojadinovic M., Vuillet L., Lajus A., Cruveiller S.,
RA   Rouy Z., Mangenot S., Segurens B., Dossat C., Franck W.L., Chang W.S.,
RA   Saunders E., Bruce D., Richardson P., Normand P., Dreyfus B.,
RA   Pignol D., Stacey G., Emerich D., Vermeglio A., Medigue C.,
RA   Sadowsky M.;
RT   "Legumes symbioses: absence of Nod genes in photosynthetic
RT   bradyrhizobia.";
RL   Science 316:1307-1312(2007).
CC   -!- FUNCTION: Sigma factors are initiation factors that promote the
CC       attachment of RNA polymerase to specific initiation sites and are
CC       then released (By similarity).
CC   -!- SIMILARITY: Belongs to the sigma-54 factor family.
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DR   EMBL; CU234118; CAL74084.1; -; Genomic_DNA.
DR   RefSeq; YP_001202334.1; NC_009445.1.
DR   STRING; 114615.BRADO0113; -.
DR   EnsemblBacteria; CAL74084; CAL74084; BRADO0113.
DR   GeneID; 5121474; -.
DR   KEGG; bra:BRADO0113; -.
DR   PATRIC; 21216560; VBIBraSp122330_0117.
DR   eggNOG; COG1508; -.
DR   HOGENOM; HOG000071904; -.
DR   KO; K03092; -.
DR   OMA; RFDPAMQ; -.
DR   ProtClustDB; PRK05932; -.
DR   BioCyc; BSP114615:GJN5-112-MONOMER; -.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
DR   GO; GO:0003700; F:sequence-specific DNA binding transcription factor activity; IEA:InterPro.
DR   GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR   GO; GO:0006352; P:DNA-dependent transcription, initiation; IEA:InterPro.
DR   InterPro; IPR000394; RNA_pol_sigma_54.
DR   InterPro; IPR007046; RNA_pol_sigma_54_core-bd.
DR   InterPro; IPR007634; RNA_pol_sigma_54_DNA-bd.
DR   Pfam; PF00309; Sigma54_AID; 1.
DR   Pfam; PF04963; Sigma54_CBD; 1.
DR   Pfam; PF04552; Sigma54_DBD; 1.
DR   PIRSF; PIRSF000774; RpoN; 1.
DR   PRINTS; PR00045; SIGMA54FCT.
DR   TIGRFAMs; TIGR02395; rpoN_sigma; 1.
DR   PROSITE; PS00717; SIGMA54_1; 1.
DR   PROSITE; PS00718; SIGMA54_2; 1.
DR   PROSITE; PS50044; SIGMA54_3; 1.
PE   3: Inferred from homology;
KW   Complete proteome; DNA-binding; DNA-directed RNA polymerase;
KW   Nucleotidyltransferase; Sigma factor; Transcription;
KW   Transcription regulation; Transferase.
SQ   SEQUENCE   546 AA;  59858 MW;  D59ABBFA20D7ADC0 CRC64;
     MALTQRLEFR QSQSLVMTPQ LMQAIKLLQL SNLDLSTFVE EELERNPLLE RANDGPEAPV
     AGEQQMAERG EFSEGGEASG DDFGDGAGSS GGESYESAPE DWMSRDLGSR TEIEQTLDTG
     LDNVFSEEPA EAAARNAQDA APTTYTEWGG GASGDEDYNL EAFVAAETTL SDHLAEQAAV
     AFVSPADRMI GQYLIDLVDE AGYLPVDLGQ AADRLGAEQA DVDAVLGVLQ TFDPPGICAR
     NLSECLAIQL RELDRYDPAM QALIEHLDLL AKRDFAALRR LCGVDDEDLV DMIGEIRRLD
     PKPGLKFGTT RTQTMVPDVY VRPGPDGGWL VELNSDTLPR VLVNQVYYSE LSKTIRKDGD
     KSYFTDCLQN ATWLVRALDQ RARTILKVAT EIVRQQDGFF THGVAHLRPL NLKAVADAIQ
     MHESTVSRVT ANKYMATNRG TFELKYFFTA SIASADGGEA HSAEAVRHHI KQLIDAEDPS
     AILSDDTIVE KLRAAGIDIA RRTVAKYREA MRIPSSVQRR RDKQSMLAHA LSSPASADRT
     RDTASV
//