ID   A6UBM5_SINMW            Unreviewed;       684 AA.
AC   A6UBM5;
DT   21-AUG-2007, integrated into UniProtKB/TrEMBL.
DT   21-AUG-2007, sequence version 1.
DT   01-MAY-2013, entry version 41.
DE   RecName: Full=RNA polymerase sigma factor;
GN   OrderedLocusNames=Smed_2223;
OS   Sinorhizobium medicae (strain WSM419) (Ensifer medicae).
OC   Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales;
OC   Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.
OX   NCBI_TaxID=366394;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=WSM419;
RG   US DOE Joint Genome Institute;
RA   Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T.,
RA   Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M.,
RA   Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N.,
RA   Mikhailova N., Reeve W.G., Richardson P.;
RT   "Complete sequence of Sinorhizobium medicae WSM419 chromosome.";
RL   Submitted (JUN-2007) to the EMBL/GenBank/DDBJ databases.
CC   -!- FUNCTION: Sigma factors are initiation factors that promote the
CC       attachment of RNA polymerase to specific initiation sites and are
CC       then released (By similarity).
CC   -!- SIMILARITY: Belongs to the sigma-70 factor family.
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DR   EMBL; CP000738; ABR61055.1; -; Genomic_DNA.
DR   RefSeq; YP_001327890.1; NC_009636.1.
DR   ProteinModelPortal; A6UBM5; -.
DR   SMR; A6UBM5; 618-683.
DR   STRING; 366394.Smed_2223; -.
DR   EnsemblBacteria; ABR61055; ABR61055; Smed_2223.
DR   GeneID; 5323084; -.
DR   KEGG; smd:Smed_2223; -.
DR   PATRIC; 23623509; VBISinMed134228_5391.
DR   eggNOG; COG0568; -.
DR   HOGENOM; HOG000270272; -.
DR   KO; K03086; -.
DR   OMA; YQGSELD; -.
DR   ProtClustDB; PRK05658; -.
DR   BioCyc; SMED366394:GJAL-2257-MONOMER; -.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0003700; F:sequence-specific DNA binding transcription factor activity; IEA:InterPro.
DR   GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR   GO; GO:0006352; P:DNA-dependent transcription, initiation; IEA:InterPro.
DR   Gene3D; 1.10.10.10; -; 2.
DR   InterPro; IPR014284; RNA_pol_sigma-70_dom.
DR   InterPro; IPR000943; RNA_pol_sigma70.
DR   InterPro; IPR009042; RNA_pol_sigma70_r1_2.
DR   InterPro; IPR007627; RNA_pol_sigma70_r2.
DR   InterPro; IPR007624; RNA_pol_sigma70_r3.
DR   InterPro; IPR007630; RNA_pol_sigma70_r4.
DR   InterPro; IPR007631; RNA_pol_sigma_70_non-ess.
DR   InterPro; IPR007127; RNA_pol_sigma_70_r1_1.
DR   InterPro; IPR013325; RNA_pol_sigma_r2.
DR   InterPro; IPR013324; RNA_pol_sigma_r3_r4.
DR   InterPro; IPR012760; RNA_pol_sigma_RpoD_C.
DR   InterPro; IPR011991; WHTH_DNA-bd_dom.
DR   Pfam; PF04546; Sigma70_ner; 1.
DR   Pfam; PF03979; Sigma70_r1_1; 1.
DR   Pfam; PF00140; Sigma70_r1_2; 1.
DR   Pfam; PF04542; Sigma70_r2; 1.
DR   Pfam; PF04539; Sigma70_r3; 1.
DR   Pfam; PF04545; Sigma70_r4; 1.
DR   PRINTS; PR00046; SIGMA70FCT.
DR   SUPFAM; SSF88946; Sigma_r2; 1.
DR   SUPFAM; SSF88659; Sigma_r3_r4; 2.
DR   TIGRFAMs; TIGR02393; RpoD_Cterm; 1.
DR   TIGRFAMs; TIGR02937; sigma70-ECF; 1.
DR   PROSITE; PS00715; SIGMA70_1; 1.
DR   PROSITE; PS00716; SIGMA70_2; 1.
PE   3: Inferred from homology;
KW   Complete proteome; DNA-binding; Sigma factor; Transcription;
KW   Transcription regulation.
SQ   SEQUENCE   684 AA;  77150 MW;  073DEC1F5BA020F8 CRC64;
     MATKVKENEE ADVEREGAPD GPLLDLSDDA VKKMIKAAKK RGYVTMDELN SVLPSEEVTS
     EQIEDTMSML SDMGINVIED EEAEEAGGSD DDDSSDDAES EGGELAPASG TALATSKKKE
     PTDRTDDPVR MYLREMGSVE LLSREGEIAI AKRIEAGRET MIAGLCESPL TFQALIIWRD
     ELNEGQTLLR EIIDLETTYS GPEAKAAPQF QSPEKIEADR KAAEEKEKVR KTRAAANDDD
     ITNVGGEGQP AEEEEDDDDE SNLSLAAMEA ELRPQVMETL DVIAETYKKL RKLQDQQVEA
     RLAATGTLSP AQERRYKELK DELIKAVKSL SLNQNRIDAL VEQLYDISKR LTQNEGRLLR
     LAESYGVKRE AFLEQYSGAE LDPNWMKSIS NLAGKGWKEF ARAENQTIRD IRQEIQNLAT
     ETGISIAEFR RIVSMVQKGE REARIAKKEM VEANLRLVIS IAKKYTNRGL QFLDLIQEGN
     IGLMKAVDKF EYRRGYKFST YATWWIRQAI TRSIADQART IRIPVHMIET INKIVRTSRQ
     MLHEIGREPT PEELAEKLAM PLEKVRKVLK IAKEPISLET PVGDEEDSHL GDFIEDKNAL
     LPIDAAIQAN LRETTTRVLA SLTPREERVL RMRFGIGMNT DHTLEEVGQQ FSVTRERIRQ
     IEAKALRKLK HPSRSRKLRS FLDS
//