ID A7HPI2_PARL1 Unreviewed; 515 AA.
AC A7HPI2;
DT 11-SEP-2007, integrated into UniProtKB/TrEMBL.
DT 11-SEP-2007, sequence version 1.
DT 01-MAY-2013, entry version 33.
DE RecName: Full=RNA polymerase sigma-54 factor;
GN OrderedLocusNames=Plav_0192;
OS Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).
OC Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales;
OC Phyllobacteriaceae; Parvibaculum.
OX NCBI_TaxID=402881;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=DS-1 / DSM 13023 / NCIMB 13966;
RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T.,
RA Dalin E., Tice H., Pitluck S., Saunders E., Brettin T., Bruce D.,
RA Detter J.C., Han C., Schmutz J., Larimer F., Land M., Hauser L.,
RA Kyrpides N., Mikhailova N., Richardson P.;
RT "Complete genome sequence and annotation of Parvibaculum
RT lavamentivorans DS-1.";
RL Submitted (JUL-2007) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: Sigma factors are initiation factors that promote the
CC attachment of RNA polymerase to specific initiation sites and are
CC then released (By similarity).
CC -!- SIMILARITY: Belongs to the sigma-54 factor family.
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DR EMBL; CP000774; ABS61815.1; -; Genomic_DNA.
DR RefSeq; YP_001411472.1; NC_009719.1.
DR ProteinModelPortal; A7HPI2; -.
DR STRING; 402881.Plav_0192; -.
DR EnsemblBacteria; ABS61815; ABS61815; Plav_0192.
DR GeneID; 5455025; -.
DR KEGG; pla:Plav_0192; -.
DR PATRIC; 22861904; VBIParLav90819_0202.
DR eggNOG; COG1508; -.
DR HOGENOM; HOG000071904; -.
DR KO; K03092; -.
DR OMA; RFDPAMQ; -.
DR BioCyc; PLAV402881:GHQA-242-MONOMER; -.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
DR GO; GO:0003700; F:sequence-specific DNA binding transcription factor activity; IEA:InterPro.
DR GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR GO; GO:0006352; P:DNA-dependent transcription, initiation; IEA:InterPro.
DR InterPro; IPR000394; RNA_pol_sigma_54.
DR InterPro; IPR007046; RNA_pol_sigma_54_core-bd.
DR InterPro; IPR007634; RNA_pol_sigma_54_DNA-bd.
DR Pfam; PF00309; Sigma54_AID; 1.
DR Pfam; PF04963; Sigma54_CBD; 1.
DR Pfam; PF04552; Sigma54_DBD; 1.
DR PIRSF; PIRSF000774; RpoN; 1.
DR PRINTS; PR00045; SIGMA54FCT.
DR TIGRFAMs; TIGR02395; rpoN_sigma; 1.
DR PROSITE; PS00717; SIGMA54_1; 1.
DR PROSITE; PS00718; SIGMA54_2; 1.
DR PROSITE; PS50044; SIGMA54_3; 1.
PE 3: Inferred from homology;
KW Complete proteome; DNA-binding; DNA-directed RNA polymerase;
KW Nucleotidyltransferase; Sigma factor; Transcription;
KW Transcription regulation; Transferase.
SQ SEQUENCE 515 AA; 56513 MW; DD47AE040F077E43 CRC64;
MALAPRLEMR QGQSLVMTPQ LQQAIKLLQL SNLELADYVE QELERNPLLE ATTSDPSDRT
GEERAAPETD RETVTTSETS LSLTDDGPLP GRDGDIDTDY DNVYADESRA DMQNDAAAAA
ADAPGPTGSD WQNMKGGGGN TGDGDYDFAA TLTREATLAE HLTEQMNTAL KTAGDRLIGA
YLIDQVNETG YMTADLAEVA ERLGTDVEDV EAVLQVLQTF EPTGICARNL KECLALQLAE
RNRLDPAMQA FLDNLELFAK RDFDTLMKLT GADREDIASM VEDIRTCNPK PGLAFGGEPV
VPVIPDVFVR SRADGSWMVE VNSETLPRVL VNQQYYSEVS KLSGDPSAKA YLSECLNNAN
WLVKSLDQRA RTILKVASEI VRQQDAFLVH GIQHLKPLNL KTIAEAISMH ESTVSRVTAN
KYIATPRGIF EMKYFFTSSI ASSSGGAAHS AEAVRHRIKE LIDVERPDAV LSDDNLVDIL
KGQGVDIARR TVAKYREALN IPSSVQRRRE KKAYA
//
