ID   B1J8U5_PSEPW            Unreviewed;       832 AA.
AC   B1J8U5;
DT   29-APR-2008, integrated into UniProtKB/TrEMBL.
DT   29-APR-2008, sequence version 1.
DT   01-MAY-2013, entry version 31.
DE   SubName: Full=DNA ligase D;
GN   OrderedLocusNames=PputW619_2651;
OS   Pseudomonas putida (strain W619).
OC   Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales;
OC   Pseudomonadaceae; Pseudomonas.
OX   NCBI_TaxID=390235;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=W619;
RA   Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C.,
RA   Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chain P.,
RA   Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M.,
RA   Hauser L., Kyrpides N., Kim E., Taghavi S., Vangronsveld D.,
RA   van der Lelie D., Richardson P.;
RT   "Complete sequence of Pseudomonas putida W619.";
RL   Submitted (FEB-2008) to the EMBL/GenBank/DDBJ databases.
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DR   EMBL; CP000949; ACA73143.1; -; Genomic_DNA.
DR   RefSeq; YP_001749512.1; NC_010501.1.
DR   ProteinModelPortal; B1J8U5; -.
DR   SMR; B1J8U5; 545-829.
DR   STRING; 390235.PputW619_2651; -.
DR   EnsemblBacteria; ACA73143; ACA73143; PputW619_2651.
DR   GeneID; 6111602; -.
DR   KEGG; ppw:PputW619_2651; -.
DR   PATRIC; 19955136; VBIPsePut93764_2665.
DR   eggNOG; COG3285; -.
DR   HOGENOM; HOG000222509; -.
DR   KO; K01971; -.
DR   OMA; DWTIRSI; -.
DR   ProtClustDB; PRK05972; -.
DR   BioCyc; PPUT390235:GHHJ-2695-MONOMER; -.
DR   GO; GO:0005524; F:ATP binding; IEA:InterPro.
DR   GO; GO:0003910; F:DNA ligase (ATP) activity; IEA:InterPro.
DR   GO; GO:0006310; P:DNA recombination; IEA:InterPro.
DR   GO; GO:0006281; P:DNA repair; IEA:InterPro.
DR   Gene3D; 2.40.50.140; -; 1.
DR   InterPro; IPR012309; DNA_ligase_ATP-dep_C.
DR   InterPro; IPR012310; DNA_ligase_ATP-dep_cent.
DR   InterPro; IPR014146; DNA_pol_LigD_ligase_dom.
DR   InterPro; IPR014144; LigD_PE_domain.
DR   InterPro; IPR014145; LigD_pol.
DR   InterPro; IPR012340; NA-bd_OB-fold.
DR   InterPro; IPR014143; NHEJ_ligase_prk.
DR   Pfam; PF04679; DNA_ligase_A_C; 1.
DR   Pfam; PF01068; DNA_ligase_A_M; 1.
DR   Pfam; PF13298; LigD_N; 1.
DR   SUPFAM; SSF50249; Nucleic_acid_OB; 1.
DR   TIGRFAMs; TIGR02777; LigD_PE_dom; 1.
DR   TIGRFAMs; TIGR02778; ligD_pol; 1.
DR   TIGRFAMs; TIGR02779; NHEJ_ligase_lig; 1.
DR   TIGRFAMs; TIGR02776; NHEJ_ligase_prk; 1.
DR   PROSITE; PS50160; DNA_LIGASE_A3; 1.
PE   4: Predicted;
KW   Complete proteome; Ligase.
SQ   SEQUENCE   832 AA;  92699 MW;  559DB0BD9447980C CRC64;
     MTAKPLQEYE RKRDFNATPE PSGKRGRAKR NHALQFCIQK HDASHLHYDF RLELNGTLKS
     WAIPKGPSLD PKVRRLAVHV EDHPLDYADF EGNIPEGHYG AGDVIVWDRG VWEPEGDANQ
     AYAKGKLRFR LQGEKLSGVW NLFRTRLAGK KEQWMLVKSH DAQARSEADY SIVEAQPDSV
     ISDRTLVPRR NASAKPAPAP KRKRAGAGKK AALPGLLQPQ LATLVDSPPA GDWRYEVKFD
     GYRVLARIEG DDVRLFTRNG HDWSHKMPRQ VAALRALGLD SAWLDGEMVV NGDNGATDFQ
     ALQNAFDTAH DEQIVYYLFD LLFLGGQDLR ALPLEDRRKA LGKLLEQDQS EVLEFSADFQ
     QPVESLLDSA CRLELEGLIG KRAGSPYTGR RSADWIKLKC KQRQEFVIVG FTDPKGSRSG
     FGALLLALHD PDTGELRYAG KVGTGFSATT LDSIHARLKP LEIGKPALPR PPTGAEARGV
     HWLKPKLMAE VSYAQMTRDG VVRHSVFHGL RDDKPASAID QERAMPAKTV PKAKRAKATE
     DLGDLRLTHP DRIIDASIGA TKREIAEYYA GVSQWILPQL KDRPVALVRA PEGLNGELFF
     QKNAGQLHIA NVLSYDKAEA GQAAMVINRP DTLLGAVQMN MLELHTWNAT DKDFDKPDRF
     VLDLDPDPAL PWKAMLDATQ LALTLLDELG LKVFLKTSGG KGMHLVVPLT RRAGWDEVKD
     FSHAIVNYLA KLFPDRLSAV SGPKNRVGRI FIDYLRNGKG ATTACAYSLR AREGLPVSVP
     IWREELGHLK GANQWHIGNL HERLAEVDDP WADMSKTRQS ITARMRKQMG MT
//