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Database: UniProt/TrEMBL
Entry: B2T3V5_PARPJ
LinkDB: B2T3V5_PARPJ
Original site: B2T3V5_PARPJ 
ID   B2T3V5_PARPJ            Unreviewed;       940 AA.
AC   B2T3V5;
DT   01-JUL-2008, integrated into UniProtKB/TrEMBL.
DT   01-JUL-2008, sequence version 1.
DT   07-JUN-2017, entry version 59.
DE   SubName: Full=DNA ligase D {ECO:0000313|EMBL:ACD16266.1};
GN   OrderedLocusNames=Bphyt_1858 {ECO:0000313|EMBL:ACD16266.1};
OS   Paraburkholderia phytofirmans (strain DSM 17436 / LMG 22146 / PsJN)
OS   (Burkholderia phytofirmans).
OC   Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
OC   Burkholderiaceae; Paraburkholderia.
OX   NCBI_TaxID=398527 {ECO:0000313|EMBL:ACD16266.1, ECO:0000313|Proteomes:UP000001739};
RN   [1] {ECO:0000313|EMBL:ACD16266.1, ECO:0000313|Proteomes:UP000001739}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=DSM 17436 / LMG 22146 / PsJN
RC   {ECO:0000313|Proteomes:UP000001739};
RX   PubMed=21551308; DOI=10.1128/JB.05055-11;
RA   Weilharter A., Mitter B., Shin M.V., Chain P.S., Nowak J.,
RA   Sessitsch A.;
RT   "Complete genome sequence of the plant growth-promoting endophyte
RT   Burkholderia phytofirmans strain PsJN.";
RL   J. Bacteriol. 193:3383-3384(2011).
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DR   EMBL; CP001052; ACD16266.1; -; Genomic_DNA.
DR   RefSeq; WP_012432869.1; NC_010681.1.
DR   ProteinModelPortal; B2T3V5; -.
DR   STRING; 398527.Bphyt_1858; -.
DR   EnsemblBacteria; ACD16266; ACD16266; Bphyt_1858.
DR   KEGG; bpy:Bphyt_1858; -.
DR   eggNOG; ENOG4105DQE; Bacteria.
DR   eggNOG; COG1793; LUCA.
DR   eggNOG; COG3285; LUCA.
DR   HOGENOM; HOG000222509; -.
DR   KO; K01971; -.
DR   OMA; AMMVEDH; -.
DR   OrthoDB; POG091H0AZ9; -.
DR   Proteomes; UP000001739; Chromosome 1.
DR   GO; GO:0005524; F:ATP binding; IEA:InterPro.
DR   GO; GO:0003910; F:DNA ligase (ATP) activity; IEA:InterPro.
DR   GO; GO:0006310; P:DNA recombination; IEA:InterPro.
DR   GO; GO:0006281; P:DNA repair; IEA:InterPro.
DR   CDD; cd04862; PaeLigD_Pol_like; 1.
DR   InterPro; IPR012309; DNA_ligase_ATP-dep_C.
DR   InterPro; IPR012310; DNA_ligase_ATP-dep_cent.
DR   InterPro; IPR014146; LigD_ligase_dom.
DR   InterPro; IPR014144; LigD_PE_domain.
DR   InterPro; IPR014145; LigD_pol_dom.
DR   InterPro; IPR012340; NA-bd_OB-fold.
DR   InterPro; IPR014143; NHEJ_ligase_prk.
DR   InterPro; IPR033651; PaeLigD_Pol-like.
DR   Pfam; PF04679; DNA_ligase_A_C; 1.
DR   Pfam; PF01068; DNA_ligase_A_M; 1.
DR   Pfam; PF13298; LigD_N; 1.
DR   SUPFAM; SSF50249; SSF50249; 1.
DR   TIGRFAMs; TIGR02777; LigD_PE_dom; 1.
DR   TIGRFAMs; TIGR02778; ligD_pol; 1.
DR   TIGRFAMs; TIGR02779; NHEJ_ligase_lig; 1.
DR   TIGRFAMs; TIGR02776; NHEJ_ligase_prk; 1.
DR   PROSITE; PS50160; DNA_LIGASE_A3; 1.
PE   4: Predicted;
KW   Complete proteome {ECO:0000313|Proteomes:UP000001739};
KW   Ligase {ECO:0000313|EMBL:ACD16266.1}.
FT   DOMAIN      384    502       DNA_LIGASE_A3. {ECO:0000259|PROSITE:
FT                                PS50160}.
SQ   SEQUENCE   940 AA;  103079 MW;  82F808A23D56D423 CRC64;
     MNDRLDLYNR KRRFDDTPEP AGTRARRKPA GRKTTRQAAG EALSYVIQEH DARRLHYDFR
     LELNGTLLSW AVPKGPSLDP SVKRLAVHVE DHPVEYGSFE GEIPPGNYGA GSVIVWDRGT
     WEPVGGAAEA ARSYAAGKLK FHLHGEKLHG GWTLVRSHMR GSGDKEQWLL IKERDDEARD
     ESDYDILKKR PGSVLSGSAS VAKGEKTTTA ASKTARKTAA SDAKSTAKRG GKSSAKAASS
     TRADPRRPDI VATRNTQSLR ELAATPSIEG AVKARLPTTF KPQLATLVDA APPGDEWSYE
     IKFDGYRVLA RIDRDAKGSA VKVFTRAGND WTAKFSKQVK AFEQLGIESA WLDGEAVVLD
     PNGVPNFQAL QNAFDANRPQ DIIVYLFDIP FLNGYDLRGV PLEQRRAILH ALMEDVDDSV
     LRFSNNFDFS AEDLLRSACD MALEGIIGKR RDSGYLSGRS STWIKLKCRR RQEFVIGGYS
     EPSGSRAAFG ALLLGVYDSK GNLNYAGRVG TGFDAALLRS VKKELDAHAT KRMPFAAVPR
     ERSRTPVHWV EPVLVAECNF AEWTSDGIVR QASFVSLRND KPARQIVKET PRQGADVQQQ
     TDSISDDAPK KRAARKTSGS NVAAAGKTTA AKPKTAKSPT TAPPAEVAGV RISHPDRVID
     KSSGARKIDL VQYYESVAEW MLPHLKDRPV SLVRAPEDIG GELFFQKHSQ KLSIPNVTQH
     PGLDPGHPPL ITVDTIKALV GAAQMGTVEF HTWNAVASNI EKPDRAVFDL DPDAALGWER
     MIEAAQLTRS LLEELGLTSF CKTSGGKGLH VVVPLAKQAG WDEVKDFSQA VAQHMAATLP
     KYFSAKMGAQ NRKQKIFVDY LRNNRGSSTV AAFSARARPG LGVSVPLAWD EVAGTTGGDQ
     WTIENLHERL AELKSDPWAD YAKTRQRITA AMKKRLNDAQ
//
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