ID B4FWF5_MAIZE Unreviewed; 185 AA.
AC B4FWF5;
DT 23-SEP-2008, integrated into UniProtKB/TrEMBL.
DT 23-SEP-2008, sequence version 1.
DT 24-JAN-2024, entry version 82.
DE SubName: Full=Histone deacetylase 6 {ECO:0000313|EMBL:ACG32506.1};
GN Name=100273587 {ECO:0000313|EnsemblPlants:Zm00001eb137960_P001};
GN ORFNames=ZEAMMB73_Zm00001d041730 {ECO:0000313|EMBL:ONM33572.1};
OS Zea mays (Maize).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade;
OC Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea.
OX NCBI_TaxID=4577 {ECO:0000313|EMBL:ACF86448.1};
RN [1] {ECO:0000313|EMBL:ACG32506.1}
RP NUCLEOTIDE SEQUENCE.
RX PubMed=18937034; DOI=10.1007/s11103-008-9415-4;
RA Alexandrov N.N., Brover V.V., Freidin S., Troukhan M.E., Tatarinova T.V.,
RA Zhang H., Swaller T.J., Lu Y.P., Bouck J., Flavell R.B., Feldmann K.A.;
RT "Insights into corn genes derived from large-scale cDNA sequencing.";
RL Plant Mol. Biol. 69:179-194(2009).
RN [2] {ECO:0000313|EMBL:ACF86448.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=B73 {ECO:0000313|EMBL:ACF86448.1};
RX PubMed=19936069; DOI=10.1371/journal.pgen.1000740;
RA Soderlund C., Descour A., Kudrna D., Bomhoff M., Boyd L., Currie J.,
RA Angelova A., Collura K., Wissotski M., Ashley E., Morrow D., Fernandes J.,
RA Walbot V., Yu Y.;
RT "Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.";
RL PLoS Genet. 5:E1000740-E1000740(2009).
RN [3] {ECO:0000313|EMBL:ONM33572.1, ECO:0000313|Proteomes:UP000007305}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. B73 {ECO:0000313|EnsemblPlants:Zm00001eb137960_P001,
RC ECO:0000313|Proteomes:UP000007305};
RC TISSUE=Seedling {ECO:0000313|EMBL:ONM33572.1};
RG Maize Genome Sequencing Project;
RA Ware D.;
RT "Update maize B73 reference genome by single molecule sequencing
RT technologies.";
RL Submitted (DEC-2015) to the EMBL/GenBank/DDBJ databases.
RN [4] {ECO:0000313|EnsemblPlants:Zm00001eb137960_P001}
RP IDENTIFICATION.
RC STRAIN=cv. B73 {ECO:0000313|EnsemblPlants:Zm00001eb137960_P001};
RG EnsemblPlants;
RL Submitted (MAY-2021) to UniProtKB.
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DR EMBL; BT041443; ACF86448.1; -; mRNA.
DR EMBL; EU960388; ACG32506.1; -; mRNA.
DR EMBL; BT063196; ACN27893.1; -; mRNA.
DR EMBL; CM007649; ONM33572.1; -; Genomic_DNA.
DR EMBL; CM007649; ONM33573.1; -; Genomic_DNA.
DR RefSeq; NP_001141476.1; NM_001148004.1.
DR AlphaFoldDB; B4FWF5; -.
DR SMR; B4FWF5; -.
DR PaxDb; 4577-GRMZM2G005205_P02; -.
DR EnsemblPlants; Zm00001eb137960_T001; Zm00001eb137960_P001; Zm00001eb137960.
DR GeneID; 100273587; -.
DR Gramene; Zm00001eb137960_T001; Zm00001eb137960_P001; Zm00001eb137960.
DR KEGG; zma:100273587; -.
DR eggNOG; KOG1343; Eukaryota.
DR HOGENOM; CLU_121179_1_0_1; -.
DR OrthoDB; 997998at2759; -.
DR Proteomes; UP000007305; Chromosome 3.
DR ExpressionAtlas; B4FWF5; baseline and differential.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 1.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR InterPro; IPR001607; Znf_UBP.
DR PANTHER; PTHR47665; HISTONE DEACETYLASE-LIKE PROTEIN; 1.
DR PANTHER; PTHR47665:SF1; HISTONE DEACETYLASE-LIKE PROTEIN; 1.
DR Pfam; PF02148; zf-UBP; 1.
DR SMART; SM00290; ZnF_UBP; 1.
DR SUPFAM; SSF57850; RING/U-box; 1.
DR PROSITE; PS50271; ZF_UBP; 1.
PE 1: Evidence at protein level;
KW Metal-binding {ECO:0000256|PROSITE-ProRule:PRU00502};
KW Proteomics identification {ECO:0007829|PeptideAtlas:B4FWF5};
KW Reference proteome {ECO:0000313|Proteomes:UP000007305};
KW Zinc {ECO:0000256|PROSITE-ProRule:PRU00502};
KW Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00502}.
FT DOMAIN 57..162
FT /note="UBP-type"
FT /evidence="ECO:0000259|PROSITE:PS50271"
FT REGION 1..36
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 9..36
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 185 AA; 20101 MW; FC5CFA80B77E470A CRC64;
MSSAADEDAL SSDKGKKREE DGTDGRSQRQ EGVEVADGKV DLGDLYGAAA GWVEARTSCP
HIGTMPPAGA DDLARVPSPD SPCSRCNHPA ENWLCFICKD VLCSRFINKH MLCHHQETGH
CLALSFSDLS VWCFSCDSYL DVQAILELRP VYEVAHLLKF GQRPPFRSLD VQDSGTGESG
SVSRA
//
