GenomeNet

Database: UniProt/TrEMBL
Entry: B4LNY9_DROVI
LinkDB: B4LNY9_DROVI
Original site: B4LNY9_DROVI 
ID   B4LNY9_DROVI            Unreviewed;      1458 AA.
AC   B4LNY9;
DT   23-SEP-2008, integrated into UniProtKB/TrEMBL.
DT   23-SEP-2008, sequence version 1.
DT   24-JAN-2024, entry version 99.
DE   RecName: Full=PHD-type domain-containing protein {ECO:0000259|PROSITE:PS50016};
GN   Name=Dvir\GJ21880 {ECO:0000313|EMBL:EDW61158.1};
GN   ORFNames=Dvir_GJ21880 {ECO:0000313|EMBL:EDW61158.1};
OS   Drosophila virilis (Fruit fly).
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea;
OC   Drosophilidae; Drosophila.
OX   NCBI_TaxID=7244 {ECO:0000313|EMBL:EDW61158.1, ECO:0000313|Proteomes:UP000008792};
RN   [1] {ECO:0000313|EMBL:EDW61158.1, ECO:0000313|Proteomes:UP000008792}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=Tucson 15010-1051.87 {ECO:0000313|Proteomes:UP000008792};
RX   PubMed=17994087; DOI=10.1038/nature06341;
RG   Drosophila 12 genomes consortium;
RA   Clark A.G., Eisen M.B., Smith D.R., Bergman C.M., Oliver B., Markow T.A.,
RA   Kaufman T.C., Kellis M., Gelbart W., Iyer V.N., Pollard D.A., Sackton T.B.,
RA   Larracuente A.M., Singh N.D., Abad J.P., Abt D.N., Adryan B., Aguade M.,
RA   Akashi H., Anderson W.W., Aquadro C.F., Ardell D.H., Arguello R.,
RA   Artieri C.G., Barbash D.A., Barker D., Barsanti P., Batterham P.,
RA   Batzoglou S., Begun D., Bhutkar A., Blanco E., Bosak S.A., Bradley R.K.,
RA   Brand A.D., Brent M.R., Brooks A.N., Brown R.H., Butlin R.K., Caggese C.,
RA   Calvi B.R., Bernardo de Carvalho A., Caspi A., Castrezana S.,
RA   Celniker S.E., Chang J.L., Chapple C., Chatterji S., Chinwalla A.,
RA   Civetta A., Clifton S.W., Comeron J.M., Costello J.C., Coyne J.A., Daub J.,
RA   David R.G., Delcher A.L., Delehaunty K., Do C.B., Ebling H., Edwards K.,
RA   Eickbush T., Evans J.D., Filipski A., Findeiss S., Freyhult E., Fulton L.,
RA   Fulton R., Garcia A.C., Gardiner A., Garfield D.A., Garvin B.E., Gibson G.,
RA   Gilbert D., Gnerre S., Godfrey J., Good R., Gotea V., Gravely B.,
RA   Greenberg A.J., Griffiths-Jones S., Gross S., Guigo R., Gustafson E.A.,
RA   Haerty W., Hahn M.W., Halligan D.L., Halpern A.L., Halter G.M., Han M.V.,
RA   Heger A., Hillier L., Hinrichs A.S., Holmes I., Hoskins R.A., Hubisz M.J.,
RA   Hultmark D., Huntley M.A., Jaffe D.B., Jagadeeshan S., Jeck W.R.,
RA   Johnson J., Jones C.D., Jordan W.C., Karpen G.H., Kataoka E.,
RA   Keightley P.D., Kheradpour P., Kirkness E.F., Koerich L.B., Kristiansen K.,
RA   Kudrna D., Kulathinal R.J., Kumar S., Kwok R., Lander E., Langley C.H.,
RA   Lapoint R., Lazzaro B.P., Lee S.J., Levesque L., Li R., Lin C.F., Lin M.F.,
RA   Lindblad-Toh K., Llopart A., Long M., Low L., Lozovsky E., Lu J., Luo M.,
RA   Machado C.A., Makalowski W., Marzo M., Matsuda M., Matzkin L.,
RA   McAllister B., McBride C.S., McKernan B., McKernan K., Mendez-Lago M.,
RA   Minx P., Mollenhauer M.U., Montooth K., Mount S.M., Mu X., Myers E.,
RA   Negre B., Newfeld S., Nielsen R., Noor M.A., O'Grady P., Pachter L.,
RA   Papaceit M., Parisi M.J., Parisi M., Parts L., Pedersen J.S., Pesole G.,
RA   Phillippy A.M., Ponting C.P., Pop M., Porcelli D., Powell J.R.,
RA   Prohaska S., Pruitt K., Puig M., Quesneville H., Ram K.R., Rand D.,
RA   Rasmussen M.D., Reed L.K., Reenan R., Reily A., Remington K.A.,
RA   Rieger T.T., Ritchie M.G., Robin C., Rogers Y.H., Rohde C., Rozas J.,
RA   Rubenfield M.J., Ruiz A., Russo S., Salzberg S.L., Sanchez-Gracia A.,
RA   Saranga D.J., Sato H., Schaeffer S.W., Schatz M.C., Schlenke T.,
RA   Schwartz R., Segarra C., Singh R.S., Sirot L., Sirota M., Sisneros N.B.,
RA   Smith C.D., Smith T.F., Spieth J., Stage D.E., Stark A., Stephan W.,
RA   Strausberg R.L., Strempel S., Sturgill D., Sutton G., Sutton G.G., Tao W.,
RA   Teichmann S., Tobari Y.N., Tomimura Y., Tsolas J.M., Valente V.L.,
RA   Venter E., Venter J.C., Vicario S., Vieira F.G., Vilella A.J.,
RA   Villasante A., Walenz B., Wang J., Wasserman M., Watts T., Wilson D.,
RA   Wilson R.K., Wing R.A., Wolfner M.F., Wong A., Wong G.K., Wu C.I., Wu G.,
RA   Yamamoto D., Yang H.P., Yang S.P., Yorke J.A., Yoshida K., Zdobnov E.,
RA   Zhang P., Zhang Y., Zimin A.V., Baldwin J., Abdouelleil A., Abdulkadir J.,
RA   Abebe A., Abera B., Abreu J., Acer S.C., Aftuck L., Alexander A., An P.,
RA   Anderson E., Anderson S., Arachi H., Azer M., Bachantsang P., Barry A.,
RA   Bayul T., Berlin A., Bessette D., Bloom T., Blye J., Boguslavskiy L.,
RA   Bonnet C., Boukhgalter B., Bourzgui I., Brown A., Cahill P., Channer S.,
RA   Cheshatsang Y., Chuda L., Citroen M., Collymore A., Cooke P., Costello M.,
RA   D'Aco K., Daza R., De Haan G., DeGray S., DeMaso C., Dhargay N., Dooley K.,
RA   Dooley E., Doricent M., Dorje P., Dorjee K., Dupes A., Elong R., Falk J.,
RA   Farina A., Faro S., Ferguson D., Fisher S., Foley C.D., Franke A.,
RA   Friedrich D., Gadbois L., Gearin G., Gearin C.R., Giannoukos G., Goode T.,
RA   Graham J., Grandbois E., Grewal S., Gyaltsen K., Hafez N., Hagos B.,
RA   Hall J., Henson C., Hollinger A., Honan T., Huard M.D., Hughes L.,
RA   Hurhula B., Husby M.E., Kamat A., Kanga B., Kashin S., Khazanovich D.,
RA   Kisner P., Lance K., Lara M., Lee W., Lennon N., Letendre F., LeVine R.,
RA   Lipovsky A., Liu X., Liu J., Liu S., Lokyitsang T., Lokyitsang Y.,
RA   Lubonja R., Lui A., MacDonald P., Magnisalis V., Maru K., Matthews C.,
RA   McCusker W., McDonough S., Mehta T., Meldrim J., Meneus L., Mihai O.,
RA   Mihalev A., Mihova T., Mittelman R., Mlenga V., Montmayeur A., Mulrain L.,
RA   Navidi A., Naylor J., Negash T., Nguyen T., Nguyen N., Nicol R., Norbu C.,
RA   Norbu N., Novod N., O'Neill B., Osman S., Markiewicz E., Oyono O.L.,
RA   Patti C., Phunkhang P., Pierre F., Priest M., Raghuraman S., Rege F.,
RA   Reyes R., Rise C., Rogov P., Ross K., Ryan E., Settipalli S., Shea T.,
RA   Sherpa N., Shi L., Shih D., Sparrow T., Spaulding J., Stalker J.,
RA   Stange-Thomann N., Stavropoulos S., Stone C., Strader C., Tesfaye S.,
RA   Thomson T., Thoulutsang Y., Thoulutsang D., Topham K., Topping I.,
RA   Tsamla T., Vassiliev H., Vo A., Wangchuk T., Wangdi T., Weiand M.,
RA   Wilkinson J., Wilson A., Yadav S., Young G., Yu Q., Zembek L., Zhong D.,
RA   Zimmer A., Zwirko Z., Jaffe D.B., Alvarez P., Brockman W., Butler J.,
RA   Chin C., Gnerre S., Grabherr M., Kleber M., Mauceli E., MacCallum I.;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450:203-218(2007).
CC   -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
CC   ---------------------------------------------------------------------------
CC   Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC   Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC   ---------------------------------------------------------------------------
DR   EMBL; CH940648; EDW61158.1; -; Genomic_DNA.
DR   RefSeq; XP_002049965.1; XM_002049929.2.
DR   SMR; B4LNY9; -.
DR   STRING; 7244.B4LNY9; -.
DR   EnsemblMetazoa; FBtr0237805; FBpp0236297; FBgn0208997.
DR   GeneID; 6625228; -.
DR   KEGG; dvi:6625228; -.
DR   eggNOG; KOG1245; Eukaryota.
DR   eggNOG; KOG4443; Eukaryota.
DR   HOGENOM; CLU_001919_0_0_1; -.
DR   InParanoid; B4LNY9; -.
DR   OMA; NDEGVHI; -.
DR   OrthoDB; 2912893at2759; -.
DR   PhylomeDB; B4LNY9; -.
DR   Proteomes; UP000008792; Unassembled WGS sequence.
DR   GO; GO:0005634; C:nucleus; IEA:UniProt.
DR   GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR   GO; GO:0006325; P:chromatin organization; IEA:UniProtKB-KW.
DR   CDD; cd21997; HMG_KMT2C-like; 1.
DR   CDD; cd15509; PHD1_KMT2C_like; 1.
DR   CDD; cd15512; PHD4_KMT2C_like; 1.
DR   CDD; cd15513; PHD5_KMT2C_like; 1.
DR   CDD; cd15514; PHD6_KMT2C_like; 1.
DR   Gene3D; 1.10.30.10; High mobility group box domain; 1.
DR   Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 5.
DR   InterPro; IPR036910; HMG_box_dom_sf.
DR   InterPro; IPR011011; Znf_FYVE_PHD.
DR   InterPro; IPR001965; Znf_PHD.
DR   InterPro; IPR019787; Znf_PHD-finger.
DR   InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR   PANTHER; PTHR45888:SF6; HL01030P; 1.
DR   PANTHER; PTHR45888; HL01030P-RELATED; 1.
DR   Pfam; PF00628; PHD; 2.
DR   SMART; SM00249; PHD; 7.
DR   SUPFAM; SSF57903; FYVE/PHD zinc finger; 6.
DR   SUPFAM; SSF47095; HMG-box; 1.
DR   PROSITE; PS50016; ZF_PHD_2; 6.
PE   4: Predicted;
KW   Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW   Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW   Reference proteome {ECO:0000313|Proteomes:UP000008792};
KW   Repeat {ECO:0000256|ARBA:ARBA00022737};
KW   Transcription {ECO:0000256|ARBA:ARBA00023163};
KW   Transcription regulation {ECO:0000256|ARBA:ARBA00023015};
KW   Zinc {ECO:0000256|ARBA:ARBA00022833};
KW   Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW   ProRule:PRU00146}.
FT   DOMAIN          206..256
FT                   /note="PHD-type"
FT                   /evidence="ECO:0000259|PROSITE:PS50016"
FT   DOMAIN          253..304
FT                   /note="PHD-type"
FT                   /evidence="ECO:0000259|PROSITE:PS50016"
FT   DOMAIN          337..398
FT                   /note="PHD-type"
FT                   /evidence="ECO:0000259|PROSITE:PS50016"
FT   DOMAIN          530..583
FT                   /note="PHD-type"
FT                   /evidence="ECO:0000259|PROSITE:PS50016"
FT   DOMAIN          580..630
FT                   /note="PHD-type"
FT                   /evidence="ECO:0000259|PROSITE:PS50016"
FT   DOMAIN          657..712
FT                   /note="PHD-type"
FT                   /evidence="ECO:0000259|PROSITE:PS50016"
FT   REGION          790..812
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          1190..1235
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        1190..1227
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   1458 AA;  163297 MW;  21F412C2A9D45BEC CRC64;
     MSLNMLGNIE DKSVVTGFDD LPYFPENFPG KVCCLCNLGE RSALGQGTLM QLKVPSSFKE
     RKSTETEKDQ ESLRKFKCGL KSKSAGNSES TYELDKIGYA DIVNTSVFFD DEFIYVHRMC
     VMWTLRKIHI KDPDVIQFIS HLSSYLEQKC SFCGQYGASI TCKMNCRQVH HWPCSSAAGC
     LLILESFTVF CTEHLSQVPI ICTDNNVECL TCSSLGDLSK LIMCCSCGDH FHSTCIGLAN
     LPDTRSGWSC ARCTKCQICR QHETNDIKFI KCEQCQKMYH AMCLRPTISS IPKYGWKCNR
     CRVCTDCGSR TPGGGSSSRW HSHYTICDSC YQQRNKGFSC PICQKAYRAA AYKEMVKCSW
     CHKFVHSTCD EEADLTAYHK KKEYNPDYDY VCPICKTSST AAQLKAVDPL ERAITDMQNA
     EQFNIKHVEI ESLNGRTCIE GNSEDPLKLP STKKKVCLTN IRGKGGKFVL HRIGAMSQLG
     KKRSSRGKGR QLVLQTGSND RYISRNLDTD LSSDKKMLLC SARDKFVLSQ DICVMCGTLG
     IESDSVLITC AQCGQCYHPY CASVKHSRGI LQKGWRCLDC TVCEGCGKKN DEARLLLCDE
     CDISYHIYCV KPPLETVPHG NWKCSFCTIC QKCGRNPTEK VKNSDASLSE CLPCASQNSC
     PLCRKAYSDG EMIIQCEQCE QWSHFLCDSI NAQYTMEYYD NNVYKCMKCR SSSKAILPVN
     ATPFNEDSLT TSKLLPEAGQ GGKTTNLSDR NIRLPNELLE STEAIHWIDG VCLSENGLNM
     IKSLSTEIKR KRKMRQPTSN SNKDAQNETV VSDDVQGDKY KDGMIWDRTE TVLPDGFSIS
     TNDDGVQVLR KKRQRNLQKL GIGGFSVRNR ALKKDNDDSV DQLNAILVLD KKKKIIRKKQ
     KNKLIEAYPA YLQEAFFGKP LLESGDVVVY DSDSSDEIGT TMKMFFTHSN ERVSDIDITN
     KNQLKPIKNT KGEKPLNENK NIFGSQFSTT TQQNKTQISA GAIADSSLSD ISRNAAPNMH
     ALDSMTSQGI SELDEINVPI NFIPSADNTK NAISVSATLV DPFTAPPQLA QDRKFQSKPV
     LPANKLSHMQ NQPKTQNITG QQQNEIRVVE EPKPTETIEC INVGTQKTAE KMRKDEDLGL
     MATISAVLYA NTEHANLKEL YPNWTDRCKQ ILKRWRSLCN EKKAPFLQKA KDNRSALRQR
     REQCKVSQPP KLETKPDDGR SWKNPPCRPK EDQSNLFGNY NGISYDHQSC YIGTATHSNN
     SHQPTEISNE NVVVKSAIQR TTMQAASSLK VSPMETRMEH NAAYEPEPVG DKKLRNLLQK
     TNSETVLNNS NSEFFLPNDV LRLGLIQNTA LTQNNPMLSM SGNPQHTDMR SLEHDGKANL
     EIKISESQEG ISSSAVELEN VGFGDILGGF GEGDDDDLLK SLTSEIGDDF NILEYADPEL
     DVNVLNTLDF EETEKNSA
//
DBGET integrated database retrieval system