ID B6IRJ6_RHOCS Unreviewed; 534 AA.
AC B6IRJ6;
DT 16-DEC-2008, integrated into UniProtKB/TrEMBL.
DT 16-DEC-2008, sequence version 1.
DT 24-JAN-2024, entry version 78.
DE RecName: Full=DNA ligase (ATP) {ECO:0000256|ARBA:ARBA00012727};
DE EC=6.5.1.1 {ECO:0000256|ARBA:ARBA00012727};
GN Name=lig {ECO:0000313|EMBL:ACI98082.1};
GN OrderedLocusNames=RC1_0647 {ECO:0000313|EMBL:ACI98082.1};
OS Rhodospirillum centenum (strain ATCC 51521 / SW).
OC Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodospirillales;
OC Rhodospirillaceae; Rhodospirillum.
OX NCBI_TaxID=414684 {ECO:0000313|EMBL:ACI98082.1, ECO:0000313|Proteomes:UP000001591};
RN [1] {ECO:0000313|Proteomes:UP000001591}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC 51521 / SW {ECO:0000313|Proteomes:UP000001591};
RA Touchman J.W., Bauer C., Blankenship R.E.;
RT "Genome sequence of Rhodospirillum centenum.";
RL Submitted (MAR-2007) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|EMBL:ACI98082.1, ECO:0000313|Proteomes:UP000001591}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC 51521 / SW {ECO:0000313|Proteomes:UP000001591};
RX PubMed=20500872; DOI=10.1186/1471-2164-11-325;
RA Lu Y.K., Marden J., Han M., Swingley W.D., Mastrian S.D., Chowdhury S.R.,
RA Hao J., Helmy T., Kim S., Kurdoglu A.A., Matthies H.J., Rollo D.,
RA Stothard P., Blankenship R.E., Bauer C.E., Touchman J.W.;
RT "Metabolic flexibility revealed in the genome of the cyst-forming alpha-1
RT proteobacterium Rhodospirillum centenum.";
RL BMC Genomics 11:325-325(2010).
CC -!- CATALYTIC ACTIVITY:
CC Reaction=ATP + (deoxyribonucleotide)n-3'-hydroxyl + 5'-phospho-
CC (deoxyribonucleotide)m = (deoxyribonucleotide)n+m + AMP +
CC diphosphate.; EC=6.5.1.1; Evidence={ECO:0000256|ARBA:ARBA00034003};
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DR EMBL; CP000613; ACI98082.1; -; Genomic_DNA.
DR RefSeq; WP_012565874.1; NC_011420.2.
DR AlphaFoldDB; B6IRJ6; -.
DR STRING; 414684.RC1_0647; -.
DR KEGG; rce:RC1_0647; -.
DR eggNOG; COG1793; Bacteria.
DR HOGENOM; CLU_005138_6_2_5; -.
DR OMA; WLFEESY; -.
DR OrthoDB; 9767858at2; -.
DR Proteomes; UP000001591; Chromosome.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR GO; GO:0003910; F:DNA ligase (ATP) activity; IEA:UniProtKB-EC.
DR GO; GO:0006310; P:DNA recombination; IEA:InterPro.
DR GO; GO:0006281; P:DNA repair; IEA:InterPro.
DR GO; GO:0006260; P:DNA replication; IEA:UniProtKB-KW.
DR CDD; cd07897; Adenylation_DNA_ligase_Bac1; 1.
DR CDD; cd07972; OBF_DNA_ligase_Arch_LigB; 1.
DR Gene3D; 1.10.3260.10; DNA ligase, ATP-dependent, N-terminal domain; 1.
DR Gene3D; 3.30.470.30; DNA ligase/mRNA capping enzyme; 1.
DR Gene3D; 2.40.50.140; Nucleic acid-binding proteins; 1.
DR InterPro; IPR026333; ATP_dep_DNA_lig_pp_1105_fam.
DR InterPro; IPR012309; DNA_ligase_ATP-dep_C.
DR InterPro; IPR012310; DNA_ligase_ATP-dep_cent.
DR InterPro; IPR016059; DNA_ligase_ATP-dep_CS.
DR InterPro; IPR036599; DNA_ligase_N_sf.
DR InterPro; IPR012340; NA-bd_OB-fold.
DR NCBIfam; TIGR04120; DNA_lig_bact; 1.
DR PANTHER; PTHR45674; DNA LIGASE 1/3 FAMILY MEMBER; 1.
DR PANTHER; PTHR45674:SF13; DNA LIGASE-RELATED; 1.
DR Pfam; PF04679; DNA_ligase_A_C; 1.
DR Pfam; PF01068; DNA_ligase_A_M; 1.
DR SUPFAM; SSF56091; DNA ligase/mRNA capping enzyme, catalytic domain; 1.
DR SUPFAM; SSF50249; Nucleic acid-binding proteins; 1.
DR PROSITE; PS00697; DNA_LIGASE_A1; 1.
DR PROSITE; PS50160; DNA_LIGASE_A3; 1.
PE 4: Predicted;
KW Ligase {ECO:0000256|ARBA:ARBA00022598, ECO:0000313|EMBL:ACI98082.1};
KW Reference proteome {ECO:0000313|Proteomes:UP000001591}.
FT DOMAIN 316..435
FT /note="ATP-dependent DNA ligase family profile"
FT /evidence="ECO:0000259|PROSITE:PS50160"
SQ SEQUENCE 534 AA; 58801 MW; DA76D3E1402D842D CRC64;
MNRFAALIDA LAFMPSRTGK VRLIADHFAT TPDPERGWTL AALTGALTFA AAKPAAVRAL
VMERVDPELF GWSYDFVGDL AETVALIWPE RPGTDSPPPT LSGVVAALDR ATRAEVPRLI
EGWLDALDAT GRWALLKLIT GGLRVGVSAR LAKTALAEWG AGNGSDIGID AVEEVWHGLR
PPYAELFAWA EARAPRPDVS AAGGFRPLML AHPLEEADIA ALDPAAYRAE WKWDGIRVQL
VGRTLGEGRL YSRTGDEITA GFPDVAARLG FDAVLDGELL VVREGEVRPF NDLQQRLNRR
QVTAKMLRDY PAWVRLYDLL VEGGEDLRGL PFDARRRRLE DWVARVRPAG MDLSPLIAFT
DWDGLAALRA GARENAIEGL MLKRGDSPYL AGRPKGPWFK WKRGPLTLDC VMMYAQRGHG
KRSSYYSDYT FGAWTGDPDG GGELVPVGKA YSGFTDEELG RLDRWVRANT VNRFGPVREV
APALVLEVAF DSVHPSGRHR SGLAMRFPRI ARIRWDKPAH EADRLETLRA LVAG
//