ID   B9JZG8_AGRVS            Unreviewed;       482 AA.
AC   B9JZG8;
DT   24-MAR-2009, integrated into UniProtKB/TrEMBL.
DT   24-MAR-2009, sequence version 1.
DT   01-MAY-2013, entry version 28.
DE   RecName: Full=RNA polymerase sigma-54 factor;
GN   Name=rpoN; OrderedLocusNames=Avi_0404;
OS   Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis
OS   (strain S4)).
OC   Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales;
OC   Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.
OX   NCBI_TaxID=311402;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=S4 / ATCC BAA-846;
RX   PubMed=19251847; DOI=10.1128/JB.01779-08;
RA   Slater S.C., Goldman B.S., Goodner B., Setubal J.C., Farrand S.K.,
RA   Nester E.W., Burr T.J., Banta L., Dickerman A.W., Paulsen I.,
RA   Otten L., Suen G., Welch R., Almeida N.F., Arnold F., Burton O.T.,
RA   Du Z., Ewing A., Godsy E., Heisel S., Houmiel K.L., Jhaveri J., Lu J.,
RA   Miller N.M., Norton S., Chen Q., Phoolcharoen W., Ohlin V.,
RA   Ondrusek D., Pride N., Stricklin S.L., Sun J., Wheeler C., Wilson L.,
RA   Zhu H., Wood D.W.;
RT   "Genome sequences of three agrobacterium biovars help elucidate the
RT   evolution of multichromosome genomes in bacteria.";
RL   J. Bacteriol. 191:2501-2511(2009).
CC   -!- FUNCTION: Sigma factors are initiation factors that promote the
CC       attachment of RNA polymerase to specific initiation sites and are
CC       then released (By similarity).
CC   -!- SIMILARITY: Belongs to the sigma-54 factor family.
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DR   EMBL; CP000633; ACM35280.1; -; Genomic_DNA.
DR   RefSeq; YP_002548284.1; NC_011989.1.
DR   STRING; 311402.Avi_0404; -.
DR   EnsemblBacteria; ACM35280; ACM35280; Avi_0404.
DR   GeneID; 7388425; -.
DR   KEGG; avi:Avi_0404; -.
DR   PATRIC; 20825762; VBIAgrVit37146_2562.
DR   eggNOG; COG1508; -.
DR   HOGENOM; HOG000071904; -.
DR   KO; K03092; -.
DR   OMA; RFDPAMQ; -.
DR   BioCyc; AVIT311402:GH2Y-422-MONOMER; -.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
DR   GO; GO:0003700; F:sequence-specific DNA binding transcription factor activity; IEA:InterPro.
DR   GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR   GO; GO:0006352; P:DNA-dependent transcription, initiation; IEA:InterPro.
DR   InterPro; IPR000394; RNA_pol_sigma_54.
DR   InterPro; IPR007046; RNA_pol_sigma_54_core-bd.
DR   InterPro; IPR007634; RNA_pol_sigma_54_DNA-bd.
DR   Pfam; PF04963; Sigma54_CBD; 1.
DR   Pfam; PF04552; Sigma54_DBD; 1.
DR   PIRSF; PIRSF000774; RpoN; 1.
DR   PRINTS; PR00045; SIGMA54FCT.
DR   TIGRFAMs; TIGR02395; rpoN_sigma; 1.
DR   PROSITE; PS00717; SIGMA54_1; 1.
DR   PROSITE; PS00718; SIGMA54_2; 1.
DR   PROSITE; PS50044; SIGMA54_3; 1.
PE   3: Inferred from homology;
KW   Complete proteome; DNA-binding; DNA-directed RNA polymerase;
KW   Nucleotidyltransferase; Sigma factor; Transcription;
KW   Transcription regulation; Transferase.
SQ   SEQUENCE   482 AA;  52710 MW;  190B8546158867A2 CRC64;
     MLEFAPNDEG TGSSEPGTDS EAPPAPAPSD TLQSDWYEHG GDGDLNERLD ANFGTAFSDD
     GANPKTDAPE MLGQWKSMPG AQGDGEGYDL DDFVAGKVSL RDHLGQQLPF VLSSASDRMI
     ALALIDQLDE AGYLRADLDE VATQMGASRD DMERILAALQ TMEPAGLFAR SLGECLAIQL
     RQRDRLDPAM AALIGNLDYL AKRDFASLKR LCGVDEEDLL DMLAEIRKLN PKPGAGFETD
     ALETVVPDIL VAPSLEGGWL VELNAETLPR VLVNNAYFTE IRRSSLREGA MKTANGQSGN
     SKTGQSKAEG EQAFLTDCLQ TANWLTRSLD QRAKTIMKVA TEIIRQQDAF LRHGVDHLRP
     LNLKTVADAI KMHESTVSRV TSNKYMLTPR GLFELKYFFS VSIGSAEGGD SHSAEAVRHR
     IRMLIAQESP ENILSDDDIV ESLKNGGVEL ARRTVAKYRE AMNIASSVQR RREKRALARN
     PG
//