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Database: UniProt/TrEMBL
Entry: C6XUR3_PEDHD
LinkDB: C6XUR3_PEDHD
Original site: C6XUR3_PEDHD 
ID   C6XUR3_PEDHD            Unreviewed;       877 AA.
AC   C6XUR3;
DT   22-SEP-2009, integrated into UniProtKB/TrEMBL.
DT   22-SEP-2009, sequence version 1.
DT   07-JUN-2017, entry version 44.
DE   SubName: Full=DNA ligase D {ECO:0000313|EMBL:ACU03913.1};
GN   OrderedLocusNames=Phep_1702 {ECO:0000313|EMBL:ACU03913.1};
OS   Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / CIP 104194 / JCM
OS   7457 / NBRC 12017 / NCIMB 9290 / NRRL B-14731 / HIM 762-3).
OC   Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales;
OC   Sphingobacteriaceae; Pedobacter.
OX   NCBI_TaxID=485917 {ECO:0000313|EMBL:ACU03913.1, ECO:0000313|Proteomes:UP000000852};
RN   [1] {ECO:0000313|EMBL:ACU03913.1, ECO:0000313|Proteomes:UP000000852}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=ATCC 13125 / DSM 2366 / CIP 104194 / JCM 7457 / NBRC 12017 /
RC   NCIMB 9290 / NRRL B-14731 / HIM 762-3
RC   {ECO:0000313|Proteomes:UP000000852};
RX   PubMed=21304637; DOI=10.4056/sigs.22138;
RA   Han C., Spring S., Lapidus A., Del Rio T.G., Tice H., Copeland A.,
RA   Cheng J.F., Lucas S., Chen F., Nolan M., Bruce D., Goodwin L.,
RA   Pitluck S., Ivanova N., Mavromatis K., Mikhailova N., Pati A.,
RA   Chen A., Palaniappan K., Land M., Hauser L., Chang Y.J.,
RA   Jeffries C.C., Saunders E., Chertkov O., Brettin T., Goker M.,
RA   Rohde M., Bristow J., Eisen J.A., Markowitz V., Hugenholtz P.,
RA   Kyrpides N.C., Klenk H.P., Detter J.C.;
RT   "Complete genome sequence of Pedobacter heparinus type strain (HIM
RT   762-3).";
RL   Stand. Genomic Sci. 1:54-62(2009).
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DR   EMBL; CP001681; ACU03913.1; -; Genomic_DNA.
DR   RefSeq; WP_015807527.1; NZ_AQGK01000001.1.
DR   STRING; 485917.Phep_1702; -.
DR   EnsemblBacteria; ACU03913; ACU03913; Phep_1702.
DR   KEGG; phe:Phep_1702; -.
DR   eggNOG; ENOG4105DQE; Bacteria.
DR   eggNOG; COG1793; LUCA.
DR   eggNOG; COG3285; LUCA.
DR   HOGENOM; HOG000222509; -.
DR   KO; K01971; -.
DR   OMA; AMMVEDH; -.
DR   OrthoDB; POG091H0AZ9; -.
DR   BioCyc; PHEP485917:GHL9-1706-MONOMER; -.
DR   Proteomes; UP000000852; Chromosome.
DR   GO; GO:0005524; F:ATP binding; IEA:InterPro.
DR   GO; GO:0003910; F:DNA ligase (ATP) activity; IEA:InterPro.
DR   GO; GO:0051103; P:DNA ligation involved in DNA repair; IEA:InterPro.
DR   GO; GO:0006310; P:DNA recombination; IEA:InterPro.
DR   InterPro; IPR012309; DNA_ligase_ATP-dep_C.
DR   InterPro; IPR012310; DNA_ligase_ATP-dep_cent.
DR   InterPro; IPR016059; DNA_ligase_ATP-dep_CS.
DR   InterPro; IPR014146; LigD_ligase_dom.
DR   InterPro; IPR014144; LigD_PE_domain.
DR   InterPro; IPR014145; LigD_pol_dom.
DR   InterPro; IPR012340; NA-bd_OB-fold.
DR   InterPro; IPR014143; NHEJ_ligase_prk.
DR   Pfam; PF04679; DNA_ligase_A_C; 1.
DR   Pfam; PF01068; DNA_ligase_A_M; 1.
DR   Pfam; PF13298; LigD_N; 1.
DR   SUPFAM; SSF50249; SSF50249; 1.
DR   TIGRFAMs; TIGR02777; LigD_PE_dom; 1.
DR   TIGRFAMs; TIGR02778; ligD_pol; 1.
DR   TIGRFAMs; TIGR02779; NHEJ_ligase_lig; 1.
DR   TIGRFAMs; TIGR02776; NHEJ_ligase_prk; 1.
DR   PROSITE; PS00333; DNA_LIGASE_A2; 1.
DR   PROSITE; PS50160; DNA_LIGASE_A3; 1.
PE   4: Predicted;
KW   Complete proteome {ECO:0000313|Proteomes:UP000000852};
KW   Ligase {ECO:0000313|EMBL:ACU03913.1};
KW   Reference proteome {ECO:0000313|Proteomes:UP000000852}.
FT   DOMAIN      307    441       DNA_LIGASE_A3. {ECO:0000259|PROSITE:
FT                                PS50160}.
SQ   SEQUENCE   877 AA;  99762 MW;  A324913915C4EF22 CRC64;
     MGLDKYNHKR DFNKTAEPKA GKSKDADQLH FVIQKHDASH LHYDFRLEME GVLKSWAVPK
     GPSTDPKVKR LAMMVEDHPY DYKDFEGIIP KGEYGGGTVI VWDEGTYEPI EEIKGKKAQD
     KYLRKQLKEG SLKIKLQGKK LKGEFALVKT RGMGENGWLL IKHKDDYAAT ADITKQDKSV
     LSGKTIAAME QTSDKVWQHG HEEKLEKAPK KKIPIGMKPM LATLVDEPFD DPDWVYEVKW
     DGYRALGFSR KNGDVQLLSR NNKPFNEKFY PIYEVMQNWK IDAVVDGEIL VLNDKGVSNF
     AELQNWRSEA DGELVYYVFD LIWYDGKDLT GLSLLQRQAI LKSILPQDDD RIRLSKVFTA
     EGTEFFEAAK KMGLEGIIAK KGSSTYTPGN RSTDWLKIKI NKRQEVVIAG FTKNKDSSKQ
     FSSLLLGVYE RGHLQYVGKV GTGFSDQLQK EMMKQFEPLM ITKSPFDEIP DVNKPSRFRP
     NPPQAKATWL KPELVCEVAY AEVTSDGVFR HPSFQGMRID KKAKDVIREA AVETKAVVNL
     DMETDDMAKT NKHAKAIKPP KAAARKTLLN PKDETQVRKV CGHELKFTHL SKVYWPEDQV
     TKRDLFNYYY QVAEYILPYL KDRPMSLNRF PGGINGQSFY QKDVKGKAPD WARTFPYTTG
     EGEAKEYLVG DDEATLLWMV SLGCIEMNPW FSRVKSPDNP DYCVIDLDPD KQNFDQVVEA
     ALTVKEVCDQ MDVPSFCKTS GSTGIHIYIP LAAKYSYDQS QMFARIIVSL VHQRIPEYTS
     LERMIPARKG KMYLDFLQNR PGATIAGPYS LRPKPGATVS MPLHWEEVKP GLKMTDFTIF
     NALERLKSEG DFFRGVLGKG IDLEKTIHKA KGVFGNS
//
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