ID D0LCY3_GORB4 Unreviewed; 328 AA.
AC D0LCY3;
DT 15-DEC-2009, integrated into UniProtKB/TrEMBL.
DT 15-DEC-2009, sequence version 1.
DT 27-MAR-2024, entry version 57.
DE SubName: Full=DNA polymerase LigD, polymerase domain protein {ECO:0000313|EMBL:ACY22476.1};
GN OrderedLocusNames=Gbro_3272 {ECO:0000313|EMBL:ACY22476.1};
OS Gordonia bronchialis (strain ATCC 25592 / DSM 43247 / BCRC 13721 / JCM 3198
OS / KCTC 3076 / NBRC 16047 / NCTC 10667) (Rhodococcus bronchialis).
OC Bacteria; Actinomycetota; Actinomycetes; Mycobacteriales; Gordoniaceae;
OC Gordonia.
OX NCBI_TaxID=526226 {ECO:0000313|EMBL:ACY22476.1, ECO:0000313|Proteomes:UP000001219};
RN [1] {ECO:0000313|Proteomes:UP000001219}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC 25592 / DSM 43247 / BCRC 13721 / JCM 3198 / KCTC 3076 /
RC NBRC 16047 / NCTC 10667 {ECO:0000313|Proteomes:UP000001219};
RG US DOE Joint Genome Institute (JGI-PGF);
RA Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H.,
RA Bruce D., Goodwin L., Pitluck S., Kyrpides N., Mavromatis K., Ivanova N.,
RA Ovchinnikova G., Saunders E., Brettin T., Detter J.C., Han C., Larimer F.,
RA Land M., Hauser L., Markowitz V., Cheng J.-F., Hugenholtz P., Woyke T.,
RA Wu D., Jando M., Schneider S., Goeker M., Klenk H.-P., Eisen J.A.;
RT "The complete chromosome of Gordonia bronchialis DSM 43247.";
RL Submitted (OCT-2009) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|EMBL:ACY22476.1, ECO:0000313|Proteomes:UP000001219}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC 25592 / DSM 43247 / BCRC 13721 / JCM 3198 / KCTC 3076 /
RC NBRC 16047 / NCTC 10667 {ECO:0000313|Proteomes:UP000001219};
RX PubMed=21304674;
RA Ivanova N., Sikorski J., Jando M., Lapidus A., Nolan M., Lucas S.,
RA Del Rio T.G., Tice H., Copeland A., Cheng J.F., Chen F., Bruce D.,
RA Goodwin L., Pitluck S., Mavromatis K., Ovchinnikova G., Pati A., Chen A.,
RA Palaniappan K., Land M., Hauser L., Chang Y.J., Jeffries C.D., Chain P.,
RA Saunders E., Han C., Detter J.C., Brettin T., Rohde M., Goker M.,
RA Bristow J., Eisen J.A., Markowitz V., Hugenholtz P., Klenk H.P.,
RA Kyrpides N.C.;
RT "Complete genome sequence of Gordonia bronchialis type strain (3410).";
RL Stand. Genomic Sci. 2:19-28(2010).
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DR EMBL; CP001802; ACY22476.1; -; Genomic_DNA.
DR RefSeq; WP_012834992.1; NC_013441.1.
DR AlphaFoldDB; D0LCY3; -.
DR STRING; 526226.Gbro_3272; -.
DR KEGG; gbr:Gbro_3272; -.
DR eggNOG; COG3285; Bacteria.
DR HOGENOM; CLU_008325_1_0_11; -.
DR OrthoDB; 4296267at2; -.
DR Proteomes; UP000001219; Chromosome.
DR CDD; cd04865; LigD_Pol_like_2; 1.
DR Gene3D; 3.90.920.10; DNA primase, PRIM domain; 1.
DR InterPro; IPR014145; LigD_pol_dom.
DR NCBIfam; TIGR02778; ligD_pol; 1.
DR PANTHER; PTHR42705:SF3; -; 1.
DR PANTHER; PTHR42705; BIFUNCTIONAL NON-HOMOLOGOUS END JOINING PROTEIN LIGD; 1.
DR Pfam; PF21686; LigD_Prim-Pol; 1.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000001219}.
FT DOMAIN 36..290
FT /note="DNA ligase D polymerase"
FT /evidence="ECO:0000259|Pfam:PF21686"
SQ SEQUENCE 328 AA; 36979 MW; 803D5CF5738189C0 CRC64;
MSPDASAGEP VVLTVGDRPV RISSPDRVYF PERGETKMDL VEYYLSVGDG IVRALRERPC
MLHRFPKGVT GKKVHQKRVP AGAPDWLETT EIYFPRYGRT ADELCVTELA SVIWAVQMST
VEFHPWNSRR ADPESPDEWR IDLDPMPDCP FSRIQRVAGV VHEVLDELGM RGFPKTSGGR
GLHIYVRIEP DWGFPDVRRA ALAFAREVEW RAPDDVTTTW WRKDRDPAAV FVDYNQNTRD
HTMASAYSVR GNPRATVSAP VTWSEIDDIE PDDFTIATMP ARFADLGDLH AEIDDVAHRI
DTLLAWAERD ELDGDTSDGP ESVDLDGS
//
