GenomeNet

Database: UniProt/TrEMBL
Entry: D8RRV7_SELML
LinkDB: D8RRV7_SELML
Original site: D8RRV7_SELML 
ID   D8RRV7_SELML            Unreviewed;      1171 AA.
AC   D8RRV7;
DT   05-OCT-2010, integrated into UniProtKB/TrEMBL.
DT   05-OCT-2010, sequence version 1.
DT   07-JUN-2017, entry version 39.
DE   RecName: Full=DNA ligase {ECO:0000256|RuleBase:RU000617};
DE            EC=6.5.1.1 {ECO:0000256|RuleBase:RU000617};
GN   ORFNames=SELMODRAFT_414166 {ECO:0000313|EMBL:EFJ24951.1};
OS   Selaginella moellendorffii (Spikemoss).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Lycopodiopsida; Selaginellales; Selaginellaceae; Selaginella.
OX   NCBI_TaxID=88036 {ECO:0000313|Proteomes:UP000001514};
RN   [1] {ECO:0000313|EMBL:EFJ24951.1, ECO:0000313|Proteomes:UP000001514}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX   PubMed=21551031; DOI=10.1126/science.1203810;
RA   Banks J.A., Nishiyama T., Hasebe M., Bowman J.L., Gribskov M.,
RA   dePamphilis C., Albert V.A., Aono N., Aoyama T., Ambrose B.A.,
RA   Ashton N.W., Axtell M.J., Barker E., Barker M.S., Bennetzen J.L.,
RA   Bonawitz N.D., Chapple C., Cheng C., Correa L.G., Dacre M.,
RA   DeBarry J., Dreyer I., Elias M., Engstrom E.M., Estelle M., Feng L.,
RA   Finet C., Floyd S.K., Frommer W.B., Fujita T., Gramzow L.,
RA   Gutensohn M., Harholt J., Hattori M., Heyl A., Hirai T., Hiwatashi Y.,
RA   Ishikawa M., Iwata M., Karol K.G., Koehler B., Kolukisaoglu U.,
RA   Kubo M., Kurata T., Lalonde S., Li K., Li Y., Litt A., Lyons E.,
RA   Manning G., Maruyama T., Michael T.P., Mikami K., Miyazaki S.,
RA   Morinaga S., Murata T., Mueller-Roeber B., Nelson D.R., Obara M.,
RA   Oguri Y., Olmstead R.G., Onodera N., Petersen B.L., Pils B.,
RA   Prigge M., Rensing S.A., Riano-Pachon D.M., Roberts A.W., Sato Y.,
RA   Scheller H.V., Schulz B., Schulz C., Shakirov E.V., Shibagaki N.,
RA   Shinohara N., Shippen D.E., Soerensen I., Sotooka R., Sugimoto N.,
RA   Sugita M., Sumikawa N., Tanurdzic M., Theissen G., Ulvskov P.,
RA   Wakazuki S., Weng J.K., Willats W.W., Wipf D., Wolf P.G., Yang L.,
RA   Zimmer A.D., Zhu Q., Mitros T., Hellsten U., Loque D., Otillar R.,
RA   Salamov A., Schmutz J., Shapiro H., Lindquist E., Lucas S.,
RA   Rokhsar D., Grigoriev I.V.;
RT   "The Selaginella genome identifies genetic changes associated with the
RT   evolution of vascular plants.";
RL   Science 332:960-963(2011).
CC   -!- CATALYTIC ACTIVITY: ATP + (deoxyribonucleotide)(n)-3'-hydroxyl +
CC       5'-phospho-(deoxyribonucleotide)(m) = (deoxyribonucleotide)(n+m) +
CC       AMP + diphosphate. {ECO:0000256|RuleBase:RU000617}.
CC   -!- SIMILARITY: Belongs to the ATP-dependent DNA ligase family.
CC       {ECO:0000256|RuleBase:RU004196}.
CC   -----------------------------------------------------------------------
CC   Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms
CC   Distributed under the Creative Commons Attribution-NoDerivs License
CC   -----------------------------------------------------------------------
DR   EMBL; GL377588; EFJ24951.1; -; Genomic_DNA.
DR   RefSeq; XP_002973996.1; XM_002973950.1.
DR   ProteinModelPortal; D8RRV7; -.
DR   STRING; 88036.EFJ24951; -.
DR   EnsemblPlants; EFJ24951; EFJ24951; SELMODRAFT_414166.
DR   GeneID; 9656363; -.
DR   Gramene; EFJ24951; EFJ24951; SELMODRAFT_414166.
DR   KEGG; smo:SELMODRAFT_414166; -.
DR   eggNOG; KOG0966; Eukaryota.
DR   eggNOG; COG1793; LUCA.
DR   InParanoid; D8RRV7; -.
DR   KO; K10777; -.
DR   OMA; HMCPSTK; -.
DR   OrthoDB; EOG093600VG; -.
DR   Proteomes; UP000001514; Unassembled WGS sequence.
DR   GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR   GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR   GO; GO:0003910; F:DNA ligase (ATP) activity; IEA:UniProtKB-EC.
DR   GO; GO:0071897; P:DNA biosynthetic process; IEA:InterPro.
DR   GO; GO:0051103; P:DNA ligation involved in DNA repair; IEA:InterPro.
DR   GO; GO:0006310; P:DNA recombination; IEA:UniProtKB-KW.
DR   GO; GO:0006260; P:DNA replication; IEA:UniProtKB-KW.
DR   CDD; cd00027; BRCT; 1.
DR   Gene3D; 1.10.3260.10; -; 1.
DR   Gene3D; 3.40.50.10190; -; 2.
DR   InterPro; IPR001357; BRCT_dom.
DR   InterPro; IPR000977; DNA_ligase_ATP-dep.
DR   InterPro; IPR012309; DNA_ligase_ATP-dep_C.
DR   InterPro; IPR012310; DNA_ligase_ATP-dep_cent.
DR   InterPro; IPR016059; DNA_ligase_ATP-dep_CS.
DR   InterPro; IPR012308; DNA_ligase_ATP-dep_N.
DR   InterPro; IPR029710; LIG4.
DR   InterPro; IPR012340; NA-bd_OB-fold.
DR   PANTHER; PTHR10459:SF84; PTHR10459:SF84; 1.
DR   Pfam; PF16589; BRCT_2; 1.
DR   Pfam; PF04679; DNA_ligase_A_C; 1.
DR   Pfam; PF01068; DNA_ligase_A_M; 1.
DR   Pfam; PF04675; DNA_ligase_A_N; 1.
DR   SMART; SM00292; BRCT; 2.
DR   SUPFAM; SSF117018; SSF117018; 1.
DR   SUPFAM; SSF50249; SSF50249; 1.
DR   SUPFAM; SSF52113; SSF52113; 1.
DR   TIGRFAMs; TIGR00574; dnl1; 1.
DR   PROSITE; PS50172; BRCT; 2.
DR   PROSITE; PS00697; DNA_LIGASE_A1; 1.
DR   PROSITE; PS00333; DNA_LIGASE_A2; 1.
DR   PROSITE; PS50160; DNA_LIGASE_A3; 1.
PE   3: Inferred from homology;
KW   ATP-binding {ECO:0000256|RuleBase:RU000617};
KW   Complete proteome {ECO:0000313|Proteomes:UP000001514};
KW   DNA damage {ECO:0000256|RuleBase:RU000617};
KW   DNA recombination {ECO:0000256|RuleBase:RU000617};
KW   DNA repair {ECO:0000256|RuleBase:RU000617};
KW   DNA replication {ECO:0000256|RuleBase:RU000617};
KW   Ligase {ECO:0000256|RuleBase:RU000617};
KW   Nucleotide-binding {ECO:0000256|RuleBase:RU000617};
KW   Reference proteome {ECO:0000313|Proteomes:UP000001514}.
FT   DOMAIN      330    473       DNA_LIGASE_A3. {ECO:0000259|PROSITE:
FT                                PS50160}.
FT   DOMAIN      640    727       BRCT. {ECO:0000259|PROSITE:PS50172}.
FT   DOMAIN      786    894       BRCT. {ECO:0000259|PROSITE:PS50172}.
SQ   SEQUENCE   1171 AA;  132190 MW;  2BDDE4F3025D0E7A CRC64;
     MGENTVRFSA VSDMLERISK SKKLPVKRKT FRTFLDHFYT DREYFSVMRL VLPELDRERG
     NYGLKESVLA KCLADALGLA KGSSDADKLV NWRKGGSSVG KNAGNFALVA AEIVGSRQSH
     TSGGLTVKRV NELLDQLAEV KSREEKSKVL AEFINKTNPV EMKWLVMIIL KDLKLGISEK
     TVFKEFHPDA DEVYNKTCDL KLVCEKLVDP KVRFKRQDIE VGKAVRPQLA SRVKNAEDAW
     KRMRGKRVIA ECKFDGDRCQ VHKDGNEVHF FSRSSIDHVE FAAAMSSVIC ENVKASKCIL
     DGEMVVWNRV TNKFAEFGTI HAVAKNAKDG VQSDEQLCYI VFDILYLDDC SVIHQPLCER
     QKLLEQKVTT VPGRFELLQP DRRNCGGQLW SITPQSAADV EKFFLMTVDN REEGIVVKDF
     DSKWEPGDRS GKWMKLKPDY VKESEMDVLI IGGYYGSGRR GGDVAQFLLG IAERPASGYP
     TKFHSFCKVG TGLSDEECRV LVDKLRPYFR KYDKNTKPPS YYVVTNNAKE RPDVWIEQPD
     KSVLLEVKSD IRKIKSEVFA SPYSLRFPRV TRVRYDKPWN ECLDIQELVR MVAEDTGAGV
     NGDGDGGRKK KQERSPKKKA PKLPLLAPHM QQTDVSGVKK VSDMLSGLVF FLVNFKLEDK
     ERFHKLVAEY GGKFSMNLNG DVTHVLAESP KGLLYETATK RGDVIHSSWF MDSIAAKELL
     PLRPKYMLHL SYKTRETLKD TLDEFGDHYF VEVDEADMKQ LFGRMRVEEL SVNDKDVDEH
     RGSLGDRKNI FEGCSFYFYY PREAAVADEA MIAGVVLRRL EVEVELRKGA VKPSLARATH
     MIVFWDSERD HSEAGLSFSE NKLVSSKKLR VLSHRWLEEA LRRDSVPPED DYDVRQALGS
     RLVEESPPRQ EEPELSKENS EHEAGDEEQD EERVSVFDTL VLEEMDGLEN EELPPKKKRH
     LQEMATPTLA KTLTLPTTSS SLDLWPTAQE AGANPTLVTS ETLKLPSFEP QKLAACSETL
     KLPSLEPRKL AACSETLKLP ETPPATVITE TVKLPSFEPD KAFDNLLADF AFLPSITREA
     PAKGFAAPQQ NKPRIVQEEV AKEDTAMKKS KASYKIEVPV EGFAGGFAAP QRNEPGTFQE
     NGSSSREEIA MPMPAKKKNK TSLKDVVRNL L
//
DBGET integrated database retrieval system