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Database: UniProt/TrEMBL
Entry: I3X2Z1_RHIFR
LinkDB: I3X2Z1_RHIFR
Original site: I3X2Z1_RHIFR 
ID   I3X2Z1_RHIFR            Unreviewed;       850 AA.
AC   I3X2Z1;
DT   05-SEP-2012, integrated into UniProtKB/TrEMBL.
DT   05-SEP-2012, sequence version 1.
DT   07-JUN-2017, entry version 27.
DE   SubName: Full=Putative ATP-dependent DNA ligase YkoU {ECO:0000313|EMBL:AFL50247.1};
DE            EC=6.5.1.1 {ECO:0000313|EMBL:AFL50247.1};
GN   Name=ykoU2 {ECO:0000313|EMBL:AFL50247.1};
GN   ORFNames=USDA257_c16580 {ECO:0000313|EMBL:AFL50247.1};
OS   Sinorhizobium fredii USDA 257.
OC   Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales;
OC   Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.
OX   NCBI_TaxID=1185652 {ECO:0000313|EMBL:AFL50247.1, ECO:0000313|Proteomes:UP000006180};
RN   [1] {ECO:0000313|EMBL:AFL50247.1, ECO:0000313|Proteomes:UP000006180}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=USDA257 {ECO:0000313|Proteomes:UP000006180};
RX   PubMed=22843606; DOI=10.1128/JB.00966-12;
RA   Schuldes J., Rodriguez Orbegoso M., Schmeisser C., Krishnan H.B.,
RA   Daniel R., Streit W.R.;
RT   "Complete Genome Sequence of the Broad-Host-Range Strain Sinorhizobium
RT   fredii USDA257.";
RL   J. Bacteriol. 194:4483-4483(2012).
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DR   EMBL; CP003563; AFL50247.1; -; Genomic_DNA.
DR   RefSeq; WP_014762428.1; NC_018000.1.
DR   EnsemblBacteria; AFL50247; AFL50247; USDA257_c16580.
DR   KEGG; sfd:USDA257_c16580; -.
DR   PATRIC; fig|1185652.3.peg.1722; -.
DR   KO; K01971; -.
DR   OrthoDB; POG091H0AZ9; -.
DR   Proteomes; UP000006180; Chromosome.
DR   GO; GO:0005524; F:ATP binding; IEA:InterPro.
DR   GO; GO:0003910; F:DNA ligase (ATP) activity; IEA:UniProtKB-EC.
DR   GO; GO:0006310; P:DNA recombination; IEA:InterPro.
DR   GO; GO:0006281; P:DNA repair; IEA:InterPro.
DR   CDD; cd04862; PaeLigD_Pol_like; 1.
DR   InterPro; IPR012309; DNA_ligase_ATP-dep_C.
DR   InterPro; IPR012310; DNA_ligase_ATP-dep_cent.
DR   InterPro; IPR014146; LigD_ligase_dom.
DR   InterPro; IPR014144; LigD_PE_domain.
DR   InterPro; IPR014145; LigD_pol_dom.
DR   InterPro; IPR012340; NA-bd_OB-fold.
DR   InterPro; IPR014143; NHEJ_ligase_prk.
DR   InterPro; IPR033651; PaeLigD_Pol-like.
DR   Pfam; PF04679; DNA_ligase_A_C; 1.
DR   Pfam; PF01068; DNA_ligase_A_M; 1.
DR   Pfam; PF13298; LigD_N; 1.
DR   SUPFAM; SSF50249; SSF50249; 1.
DR   TIGRFAMs; TIGR02777; LigD_PE_dom; 1.
DR   TIGRFAMs; TIGR02778; ligD_pol; 1.
DR   TIGRFAMs; TIGR02779; NHEJ_ligase_lig; 1.
DR   TIGRFAMs; TIGR02776; NHEJ_ligase_prk; 1.
DR   PROSITE; PS50160; DNA_LIGASE_A3; 1.
PE   4: Predicted;
KW   Complete proteome {ECO:0000313|Proteomes:UP000006180};
KW   Ligase {ECO:0000313|EMBL:AFL50247.1}.
FT   DOMAIN      332    472       DNA_LIGASE_A3. {ECO:0000259|PROSITE:
FT                                PS50160}.
SQ   SEQUENCE   850 AA;  94080 MW;  172827A3D2947FE4 CRC64;
     MGLDLYREKR DFDSTPEPKG RKARRAGNSF VVQKHDATRL HYDFRLEMDG VLKSWAVTKG
     PSLIPGEKRL AVHVEDHPLE YGDFEGTIPK GEYGGGTVIL WDRGTWSPIG DARRGYAKGH
     LDFELSGEKL GGRWHLVRMA GKPREKRENW LLIKGDDQAA RSEEDPDILE ERPESVLTGR
     EIKDVAGEEP GWSSKTGRIR KRARSKKTTA PQEQEPEAVM NVPDPSKIKG AKAAALPDFV
     EPSLATLVSS APAGERWLHE IKFDGYRLQA RIEAGRVRLL TRSGLDWTKR FGKALVSALQ
     ALPVGTALID GEIVVETGSG ASDFSGLQAD LSEGRSDRFR FYVFDLLYLD GYDLRALPLI
     KRKELLDQLI GEDDGIVRFS SHFEEEGRLV LSHACRLSLE GIVSKLRDAP YRTGRNKSWV
     KSKCSARQEF VVAGYVPSTT SRKAIGSLVL GVYDGDKLDH VGRVGTGFTA ALAEDLLKRL
     DRLRTSESPF AARLSAEDAR QVRYVKPELV AEVEFRAWTA DGHLRHASFR GLREDRLAGE
     IVRETPKSTG TQPKPPRRTV KLTHPDRLYW PDEGVTKEGL ADYYAEVWRF IGPHIVGRPL
     ALVRCPNGIT GEQFFQKHAW KGLNPNIVLV NDPKEPPDEQ LLSIRDLDGL IALVQSAVLE
     IHPWGSTVAD WEKPDTIIMD LDPGEDVPFE AVIDAAFETA DRLKAAGLVP FVKTSGGKGL
     HVVAPLIPKA EWPAVKAFTK SIADAMASDS SDRFVSTITK SKRRGKILVD YLRNQRGATA
     VAAYSTRARP GAAVSMPLSW DELAPGIGPA YFTVENTPTR LQSLSADPWA DFRAAAIPLK
     EPKAGRRKAA
//
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