GenomeNet

Database: UniProt/TrEMBL
Entry: M4SD88_9SPHN
LinkDB: M4SD88_9SPHN
Original site: M4SD88_9SPHN 
ID   M4SD88_9SPHN            Unreviewed;       849 AA.
AC   M4SD88;
DT   29-MAY-2013, integrated into UniProtKB/TrEMBL.
DT   29-MAY-2013, sequence version 1.
DT   07-JUN-2017, entry version 21.
DE   SubName: Full=DNA ligase D {ECO:0000313|EMBL:AGH48607.1};
GN   ORFNames=G432_04400 {ECO:0000313|EMBL:AGH48607.1};
OS   Sphingomonas sp. MM-1.
OC   Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales;
OC   Sphingomonadaceae; Sphingomonas.
OX   NCBI_TaxID=745310 {ECO:0000313|EMBL:AGH48607.1, ECO:0000313|Proteomes:UP000011816};
RN   [1] {ECO:0000313|EMBL:AGH48607.1, ECO:0000313|Proteomes:UP000011816}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=MM-1 {ECO:0000313|EMBL:AGH48607.1};
RX   PubMed=23682148;
RA   Tabata M., Ohtsubo Y., Ohhata S., Tsuda M., Nagata Y.;
RT   "Complete Genome Sequence of the gamma-Hexachlorocyclohexane-Degrading
RT   Bacterium Sphingomonas sp. Strain MM-1.";
RL   Genome Announc. 1:E00247-13(2013).
CC   -----------------------------------------------------------------------
CC   Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms
CC   Distributed under the Creative Commons Attribution-NoDerivs License
CC   -----------------------------------------------------------------------
DR   EMBL; CP004036; AGH48607.1; -; Genomic_DNA.
DR   EnsemblBacteria; AGH48607; AGH48607; G432_04400.
DR   KEGG; sphm:G432_04400; -.
DR   PATRIC; fig|745310.14.peg.904; -.
DR   KO; K01971; -.
DR   OrthoDB; POG091H0AZ9; -.
DR   BioCyc; SSP745310:G13DX-886-MONOMER; -.
DR   Proteomes; UP000011816; Chromosome.
DR   GO; GO:0005524; F:ATP binding; IEA:InterPro.
DR   GO; GO:0003910; F:DNA ligase (ATP) activity; IEA:InterPro.
DR   GO; GO:0006310; P:DNA recombination; IEA:InterPro.
DR   GO; GO:0006281; P:DNA repair; IEA:InterPro.
DR   CDD; cd04862; PaeLigD_Pol_like; 1.
DR   InterPro; IPR012309; DNA_ligase_ATP-dep_C.
DR   InterPro; IPR012310; DNA_ligase_ATP-dep_cent.
DR   InterPro; IPR014146; LigD_ligase_dom.
DR   InterPro; IPR014144; LigD_PE_domain.
DR   InterPro; IPR014145; LigD_pol_dom.
DR   InterPro; IPR012340; NA-bd_OB-fold.
DR   InterPro; IPR014143; NHEJ_ligase_prk.
DR   InterPro; IPR033651; PaeLigD_Pol-like.
DR   Pfam; PF04679; DNA_ligase_A_C; 1.
DR   Pfam; PF01068; DNA_ligase_A_M; 1.
DR   Pfam; PF13298; LigD_N; 1.
DR   SUPFAM; SSF50249; SSF50249; 1.
DR   TIGRFAMs; TIGR02777; LigD_PE_dom; 1.
DR   TIGRFAMs; TIGR02778; ligD_pol; 1.
DR   TIGRFAMs; TIGR02779; NHEJ_ligase_lig; 1.
DR   TIGRFAMs; TIGR02776; NHEJ_ligase_prk; 1.
DR   PROSITE; PS50160; DNA_LIGASE_A3; 1.
PE   4: Predicted;
KW   Complete proteome {ECO:0000313|Proteomes:UP000011816};
KW   Ligase {ECO:0000313|EMBL:AGH48607.1};
KW   Reference proteome {ECO:0000313|Proteomes:UP000011816}.
FT   DOMAIN      341    432       DNA_LIGASE_A3. {ECO:0000259|PROSITE:
FT                                PS50160}.
SQ   SEQUENCE   849 AA;  92343 MW;  7F849B7F86F4B204 CRC64;
     MARAKSAVSR AAGKPRPKPK VRAAAAKGEA ALDRYRAMRD FSRTAEPSGA TRPASGHGFV
     VQKHDATRLH YDFRLEMDGV LKSWAVTRGP SPDPADKRLA VRTEDHPLDY AHFEGTIPKG
     QYGGGTVMLW DEGTWEPMPG KDPRRTLEEG HLHFILHGRR MKGEWLLVRL KPRAGEKREN
     WLLRKVDDDF AGGPDDLVGQ YLTSVESGRS MAEIADGAAP PKRATAKAAA GTGKAKPATM
     RGRADSPPPF RPVQLATLVD HAPAGDRWLH ELKYDGYRLL LAVGGGKARA YTRSGLDWSD
     RFPAVVAEAA GLAVRSALID GEAVVLDAEG RSSFQALQAA LKGDPAAIIF FAFDLLTRDG
     EDLTALPLLE RKQRLAALIG AGGDHLHYAD HVAGRGEAFF QKACKAGLEG IVSKRADAAY
     AGGRSGSWVK VKCLHRQEFV LLGWTSSDRN SGFRSLLLGL NEEGGLRYAG KVGTGFDMAE
     IDRLLAAMKP LETATAPVSA PRAATRGAHW IEPRLVVEVA FTEFTGDGVL RHPSYIGLRE
     DKPAEAVIRE EEVPVAELAE RSPSPVRITN RDRVIFPDAG ITKGALADYY EAIAPAMLPW
     VANRPISLVR CPQGRARKCF FQKHDAGSFG DHVHHIPIRE KDGGEEPYLY IEDAAGLLAC
     VQMGTIEFHG WGAPIADIER PDRLVFDLDP DEGLEFGEVT AAAAHIRDEL AAIGLATFAM
     VTGGKGVHVV APLRPEAEWP EVKDFARRFA TALAETQPQR FTSALAKARR KGRIFVDYLR
     NERGATAVMP YSARAREGAP VAAPLTWEEL RALDRPAPWH VGDVDDLVRR AASRDLAGWG
     RADQALPGV
//
DBGET integrated database retrieval system