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Database: UniProt/TrEMBL
Entry: Q13Z47_PARXL
LinkDB: Q13Z47_PARXL
Original site: Q13Z47_PARXL 
ID   Q13Z47_PARXL            Unreviewed;      1001 AA.
AC   Q13Z47;
DT   22-AUG-2006, integrated into UniProtKB/TrEMBL.
DT   22-AUG-2006, sequence version 1.
DT   25-OCT-2017, entry version 68.
DE   SubName: Full=ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase module {ECO:0000313|EMBL:ABE30642.1};
DE            EC=6.5.1.1 {ECO:0000313|EMBL:ABE30642.1};
GN   ORFNames=Bxe_A2328 {ECO:0000313|EMBL:ABE30642.1};
OS   Paraburkholderia xenovorans (strain LB400).
OC   Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
OC   Burkholderiaceae; Paraburkholderia.
OX   NCBI_TaxID=266265 {ECO:0000313|EMBL:ABE30642.1, ECO:0000313|Proteomes:UP000001817};
RN   [1] {ECO:0000313|EMBL:ABE30642.1, ECO:0000313|Proteomes:UP000001817}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=LB400 {ECO:0000313|EMBL:ABE30642.1,
RC   ECO:0000313|Proteomes:UP000001817};
RX   PubMed=17030797; DOI=10.1073/pnas.0606924103;
RA   Chain P.S., Denef V.J., Konstantinidis K.T., Vergez L.M., Agullo L.,
RA   Reyes V.L., Hauser L., Cordova M., Gomez L., Gonzalez M., Land M.,
RA   Lao V., Larimer F., LiPuma J.J., Mahenthiralingam E., Malfatti S.A.,
RA   Marx C.J., Parnell J.J., Ramette A., Richardson P., Seeger M.,
RA   Smith D., Spilker T., Sul W.J., Tsoi T.V., Ulrich L.E., Zhulin I.B.,
RA   Tiedje J.M.;
RT   "Burkholderia xenovorans LB400 harbors a multi-replicon, 9.73-Mbp
RT   genome shaped for versatility.";
RL   Proc. Natl. Acad. Sci. U.S.A. 103:15280-15287(2006).
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DR   EMBL; CP000270; ABE30642.1; -; Genomic_DNA.
DR   RefSeq; WP_011488273.1; NZ_CP008760.1.
DR   ProteinModelPortal; Q13Z47; -.
DR   STRING; 266265.Bxe_A2328; -.
DR   EnsemblBacteria; ABE30642; ABE30642; Bxe_A2328.
DR   GeneID; 4004661; -.
DR   KEGG; bxb:DR64_32; -.
DR   KEGG; bxe:Bxe_A2328; -.
DR   PATRIC; fig|266265.5.peg.2201; -.
DR   eggNOG; ENOG4105DQE; Bacteria.
DR   eggNOG; COG1793; LUCA.
DR   eggNOG; COG3285; LUCA.
DR   HOGENOM; HOG000222509; -.
DR   KO; K01971; -.
DR   OMA; AMMVEDH; -.
DR   OrthoDB; POG091H0AZ9; -.
DR   Proteomes; UP000001817; Chromosome 1.
DR   GO; GO:0005524; F:ATP binding; IEA:InterPro.
DR   GO; GO:0003910; F:DNA ligase (ATP) activity; IEA:UniProtKB-EC.
DR   GO; GO:0006310; P:DNA recombination; IEA:InterPro.
DR   GO; GO:0006281; P:DNA repair; IEA:InterPro.
DR   CDD; cd04862; PaeLigD_Pol_like; 1.
DR   InterPro; IPR012309; DNA_ligase_ATP-dep_C.
DR   InterPro; IPR012310; DNA_ligase_ATP-dep_cent.
DR   InterPro; IPR014146; LigD_ligase_dom.
DR   InterPro; IPR014144; LigD_PE_domain.
DR   InterPro; IPR014145; LigD_pol_dom.
DR   InterPro; IPR012340; NA-bd_OB-fold.
DR   InterPro; IPR014143; NHEJ_ligase_prk.
DR   InterPro; IPR033651; PaeLigD_Pol-like.
DR   Pfam; PF04679; DNA_ligase_A_C; 1.
DR   Pfam; PF01068; DNA_ligase_A_M; 1.
DR   Pfam; PF13298; LigD_N; 1.
DR   SUPFAM; SSF50249; SSF50249; 1.
DR   TIGRFAMs; TIGR02777; LigD_PE_dom; 1.
DR   TIGRFAMs; TIGR02778; ligD_pol; 1.
DR   TIGRFAMs; TIGR02779; NHEJ_ligase_lig; 1.
DR   TIGRFAMs; TIGR02776; NHEJ_ligase_prk; 1.
DR   PROSITE; PS50160; DNA_LIGASE_A3; 1.
PE   4: Predicted;
KW   Complete proteome {ECO:0000313|Proteomes:UP000001817};
KW   Ligase {ECO:0000313|EMBL:ABE30642.1};
KW   Reference proteome {ECO:0000313|Proteomes:UP000001817}.
FT   DOMAIN      389    516       DNA_LIGASE_A3. {ECO:0000259|PROSITE:
FT                                PS50160}.
SQ   SEQUENCE   1001 AA;  108786 MW;  C93F40DDE8EC7F7C CRC64;
     MNDRLDTYNR KRRFDDTPEP AGTRTSRKQG GRKTAGQASP EALSYVIQEH DARRLHYDFR
     LELNGTLLSW AVPKGPSLDP SVKRLAVHVE DHPVEYGSFE GEIPLGNYGA GSVIVWDRGT
     WEPLGGAAEA ARAYAAGKLK FQLHGEKLHG GWTLVRSHMR GSGDKEQWLL IKERDDEARD
     ESKYDILKKR PGSVLADSAA AVKGAKTAKT AAAKSTAKTA SKAAVATATK ATADPDSASL
     AKRTGRNGAQ KASSSRADPK RPDIVATRSA QSLRDLAASP SIEGAVPARL PATFKPQLAT
     LVDGAPPGNE WSYEIKFDGY RVLVRIDRAT KGSAVKVLTR AGNDWTAKFS KQVKAFEQLD
     IESAWLDGEA VVLNQNGVPN FQALQNAFDS NRPQDIVIYL FDIPFLNGYD LRGVPLEQRR
     AILRALLEDA DDSVLRFSNN FEFSADDLLR SACDMALEGI IGKRRDSGYM SGRSSAWIKL
     KCRRRQEFVI GGYSEPSGSR AAFGALLLGV YDGNGKLQYA GRVGTGFDAA LLRSVKKELD
     AHETRHMPFA AAPRERSRTP VHWVEPVLVA ECNFAEWTSD GIVRQASFVS LRSDKPARQI
     VKETPRQGAD VQQQTDSVSN DAPTKRAARK TSASAATTSG EGKTRVAKSK TADAKDASTK
     SRGVEASGAK GSAAKAAATK PTAATAKAAK ATKTSAAKAN TTSAPGEVAG VRVSHPDRVI
     DRSTGTRKID LVRYYESVAD WMLPHLRDRP VSLVRAPEDI DGELFFQKHS QKLSIPNVTQ
     HPGLDPGHPP LITVDTLKAL VGAAQMGTVE FHTWNAVVSN IEKPDRMVFD LDPDASLGWE
     RMIEAAQLTR SLLEELGLAS FCKTSGGKGF HVVVPLAKQA GWDEVKDFSQ AVAQHMAATL
     PRYFSAKMGA QNRKQKIFVD YLRNNRGSST VAAFSARARP GLGVSVPLAW DEVATTTGGA
     QWTIENLHER LADLKSDPWA DYAKTRQRIT AAMKKRLDDA Q
//
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