KEGG   Trichoderma reesei QM6a: TRIREDRAFT_73778
Entry
TRIREDRAFT_73778  CDS       T02991                                 
Name
(RefSeq) replication factor C, subunit 5-like protein
  KO
K10756  replication factor C subunit 3/5
Organism
tre  Trichoderma reesei QM6a
Pathway
tre03030  DNA replication
tre03410  Base excision repair
tre03420  Nucleotide excision repair
tre03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:tre00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    TRIREDRAFT_73778
   03410 Base excision repair
    TRIREDRAFT_73778
   03420 Nucleotide excision repair
    TRIREDRAFT_73778
   03430 Mismatch repair
    TRIREDRAFT_73778
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:tre03032]
    TRIREDRAFT_73778
   03036 Chromosome and associated proteins [BR:tre03036]
    TRIREDRAFT_73778
   03400 DNA repair and recombination proteins [BR:tre03400]
    TRIREDRAFT_73778
DNA replication proteins [BR:tre03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    TRIREDRAFT_73778
  DNA Replication Termination Factors
   ELG1-RFC complex
    TRIREDRAFT_73778
Chromosome and associated proteins [BR:tre03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    TRIREDRAFT_73778
DNA repair and recombination proteins [BR:tre03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     TRIREDRAFT_73778
  Check point factors
   HRAD17(Rad24)-RFC complex
    TRIREDRAFT_73778
SSDB
Motif
Pfam: DNA_pol3_delta2 AAA_22 AAA AAA_16 Rep_fac_C AAA_24 Rad17 ABC_tran ATPase_2 DNA_pol3_delta T4SS-DNA_transf ImpA_N
Other DBs
NCBI-GeneID: 18488244
NCBI-ProteinID: XP_006961615
JGI: Trire2_73778
UniProt: G0R7F9
Position
Unknown
AA seq 352 aa
MALIVDKHRPRSLEALSYHHELSERLQSLAQSGDFPHLLVYGPSGAGKKTRIVATLKELY
GPGVEKIKIDARVFQTSSNRKLEFNIVASNYHLEITPSDVGQYDRVVVQDLLKEVAQTQQ
VDQSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRTL
LVRVAAPTHAEICDALAQSAKRENWEVVQGLHQRIAEESGRNLRRALLMLEAVHAQNEKV
TDTTPIPPADWEALIGQIAKEIIEEHTPARILQVRAKLYDLLTHCIPPTTIIKTLTFKLL
NLIDDGLKAEVIKWSAFYEHRIKTGTKVIFHLEAFVAKFMRILEMYLMSMDM
NT seq 1059 nt   +upstreamnt  +downstreamnt
atggccctcatcgtcgacaagcatcgcccgcggtccctcgaggctctgtcatatcaccat
gagctctcagaaagactccagtctctggcccaaagcggcgactttccgcacctgctcgtc
tacggcccctcgggagccggcaagaaaacgaggatagtagcgacgctgaaggagctgtac
ggccccggcgtggagaagatcaagatcgacgcccgagtgttccagacgtctagcaaccga
aagctcgagttcaacattgtcgcctccaactaccacctggaaatcacgccgtcggacgtg
gggcaatacgatcgagtcgtcgtgcaggatctgttgaaagaggtggcgcagacacagcag
gtggaccagtcggcgaagcagcggttcaaggtcgtggtcatcaacgaggcggaccatctc
acccgagatgcccaggcagcgcttcgtcgcaccatggaaaagtactctccaaacttgcgt
ctgattctcttggcgaattcgacggccaatatcattgcgccgattcgttcgagaacattg
ctcgttagagtggccgctcccacacatgccgaaatctgcgacgccctcgcgcagtcggcc
aagagggagaattgggaggttgttcaggggctacaccagcggatagctgaggagagcggg
aggaatctgcgtcgtgcgctgttgatgttggaggccgttcacgcacaaaatgagaaagtc
acagataccacgcctatcccgcctgcggactgggaagcactcatcggccagatcgccaag
gagatcattgaggaacacacgcctgcgcggatcctgcaggtgcgcgccaagttgtacgat
ctgctgacgcactgcatcccgccgaccacgatcatcaagacgctcacattcaagctgctg
aacctcattgacgacgggctcaaggcggaagtcataaagtggtctgccttttacgagcac
cggatcaagacgggcaccaaggtcatctttcacctggaggcctttgtggcgaagtttatg
cgcatcttggaaatgtatctgatgagcatggacatgtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (10)   
   KEGG ORTHOLOGY (1)   
   RefGene (5)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (12)   
   Pfam (12)   
All databases (34)   

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