KEGG   Thermotoga sp. RQ2: TRQ2_0847
Entry
TRQ2_0847         CDS       T00706                                 
Name
(GenBank) DNA ligase, NAD-dependent
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
trq  Thermotoga sp. RQ2
Pathway
trq03030  DNA replication
trq03410  Base excision repair
trq03420  Nucleotide excision repair
trq03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:trq00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    TRQ2_0847
   03410 Base excision repair
    TRQ2_0847
   03420 Nucleotide excision repair
    TRQ2_0847
   03430 Mismatch repair
    TRQ2_0847
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:trq03032]
    TRQ2_0847
   03400 DNA repair and recombination proteins [BR:trq03400]
    TRQ2_0847
Enzymes [BR:trq01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     TRQ2_0847
DNA replication proteins [BR:trq03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     TRQ2_0847
DNA repair and recombination proteins [BR:trq03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     TRQ2_0847
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     TRQ2_0847
   MMR (mismatch excision repair)
    DNA ligase
     TRQ2_0847
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      TRQ2_0847
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 HHH_5 BRCT DNA_ligase_ZBD HHH PTCB-BRCT HHH_8 HHH_3 5_3_exonuc RNA_ligase BRCT_2 RUBY_RBDX UPF0758_N UBA_3
Other DBs
NCBI-ProteinID: ACB09199
UniProt: B1LA51
Position
872993..875059
AA seq 688 aa
MSERKIPKEVIEEVERLREEIEYHNYRYYVLNDPVITDEEYDKLMRRLIELERMYPELVT
PDSPTQRVGGKVLEGFKTVKHSVPMLSLDNTYNEEEILEFDRRVKKTLQEAEVEYVAELK
IDGVSIALRYENGKFVLGATRGDGIEGEDVSENVKTVRSIPLRLRKPVTVEVRGEIYMPV
DEFKRLNDEREEEGLPPFANPRNAAAGTLRQLNTALVAARRLDSFIYYVVHPENYGLKTQ
WEALQFLKELGFKVNPHSKLCKNIQEVIDYWREWEERKKELDYWVDGVVVKVNRFDFQRI
LGETSKAPRWAIAFKFPAEQARTRVLDVTIQVGRTGVLTPVAELEPVQLAGTIVKRASLH
NFEYIREKDIRIGDYVFVEKAGGIIPQIVKSIPELRTGSEKEIKPPDKCPVCGGKVGKLD
PEEVALRCLNPHCPAKLKRALRTLVSREALDIEGLGEKLIDRLVDAGLVKDIADIFYLTP
FDLAQLGPGIGQRTIAKILQEIEEAKKRPLHKLITGLGIPMVGQKTAKILAEHFKSLEAI
ADASYETLKDIPGIGPEIAKSIVEYFRNPKTREIIEKLKKAGVKLEERVMKLDILKGLTF
AVTGTLKNFTREEIVEFFEKLGAKVVNSVSRNTDYLIVGENPGSKYEKAKMLKVKTMSEE
EFLEFVRKRAELKGYNFDEIMRSWKEWS
NT seq 2067 nt   +upstreamnt  +downstreamnt
atgagtgagagaaagatcccaaaggaagtaattgaagaagtggaaaggctcagagaggag
atcgagtatcacaactacagatactacgttttgaacgatccagttattacggacgaggaa
tatgacaaactcatgagaaggctcattgaactggaaaggatgtatccagaactggttaca
ccggattcgccaactcagagggtagggggaaaggtactcgaaggttttaaaacggtaaag
cattccgttcctatgttgagtctggataacacgtacaacgaagaagagattctcgaattc
gatcggcgtgttaaaaaaactcttcaggaggcagaagtcgagtacgttgccgagctgaag
atagacggcgtttccatagctctcagatatgagaacggaaagttcgtcttgggagcgaca
cggggagatgggatagaaggagaggatgtctctgagaatgtgaagaccgtacgcagtatt
ccacttcgtctgagaaagcccgtcaccgtagaagtgagaggggaaatatacatgcctgtg
gatgaattcaaaaggttgaacgacgaaagagaagaagaaggactacctccttttgccaat
ccgaggaatgccgctgcaggaacgcttcggcagttgaacacggcactcgttgcggcaagg
cgtctggattcgttcatttactatgtggttcatcccgaaaactacggtttgaagacacaa
tgggaagctctccagtttctgaaagaactcggtttcaaggtgaatccacactctaaactg
tgtaaaaacattcaggaagtgatcgattactggagggagtgggaagaaagaaagaaggag
ctggattattgggttgatggcgttgtggtgaaggtgaacagattcgatttccagagaatt
ctcggcgaaacatcgaaagcaccgcgatgggctatcgcattcaaatttcctgctgagcag
gcaagaaccagggtgctggatgtcaccatccaggttggacgaacaggtgttctcacaccc
gttgccgagctcgaacccgttcagctcgctggaacgattgtgaagagagcttcgctgcac
aatttcgagtacataagagaaaaagatatcaggataggagactatgtctttgtggaaaaa
gccggtggaatcattcctcaaatagtcaaatcgataccggaattgagaaccggaagcgaa
aaggaaataaaaccacccgataagtgtcctgtctgcggcgggaaagtaggaaagttggat
cccgaagaggttgctctcaggtgtctaaacccgcattgtcctgccaaactgaagagggct
ttgaggactctggtttccagagaggctctcgatattgaaggactcggggagaagctgata
gacagattggtcgatgctggccttgtaaaggatatagcggatatcttctacctcactcct
ttcgatctcgctcagcttggaccggggatcggtcagcgaacgatagctaagattctccaa
gagatagaagaggcgaagaagaggccgctccataaactgataacgggtcttggaattccc
atggtaggtcagaagacggcgaaaatcctcgcggaacatttcaaatccctggaagcaatc
gcagatgcttcttatgaaacactgaaggacataccgggaatcggtccagaaatcgcaaag
agcatcgttgagtacttccgaaatccaaaaacaagggaaatcattgaaaaactcaaaaaa
gctggagtgaaactcgaagagagagttatgaaactcgatattctgaagggattgactttc
gccgtgacaggtaccttgaagaactttacgagagaagaaatagtagagtttttcgagaag
ctgggagcgaaagtcgtcaactctgtgagcaggaacacggactatctcatagtgggtgaa
aatcccggttccaagtacgaaaaagcgaagatgttgaaagtaaaaacgatgagtgaggaa
gaattcctcgagtttgtcagaaaaagagcagaattgaaagggtacaacttcgatgagata
atgaggagttggaaggaatggagttga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (16)   
   Pfam (16)   
All databases (37)   

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