KEGG T02140: Terro

Terriglobus roseus: Terro_2462

Entry

Terro_2462 CDS T02140

Definition

ATP-dependent DNA ligase LigD polymerase module, ATP-dependent DNA ligase LigD phosphoesterase module

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

trs Terriglobus roseus

Pathway

trs03410	Base excision repair
trs03420	Nucleotide excision repair
trs03430	Mismatch repair
trs03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:trs03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:trs03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:trs03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:trs03450]

SSDB

Motif

Pfam:

LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S

Other DBs

NCBI-GI:

390958291

NCBI-GeneID:

13040835

UniProt:

I3ZHJ5

Position

2944685..2947534

AA seq 949 aa
MAKAKKASTSAASSAGDAVDEQLARYRSMRDFKVTAEPSGGTKSKKPEALPFVIQKHAAT
RLHYDFRLGWNGVLKSWAVAKGPSYNVHDRRLAVQVEDHPMEYGGFEGIIPRGQYGGGTV
MVWDQGTWEPHVDVDEGLRKGSLKFGINGTKMHGNWTLVRMGGKAAQEGKPNWLLIKEHD
DFERGPDDPCITEEMPNSAVTGRTLEEIATASTHVWNSKETAGEGPAWYRDRARDADAAS
TSDKAASKPAAKPSAKTTSKASPKQAKSPPVVPAQIEKLPQEKLPDFLKPQLAGETTAPP
AGDEWVHELKLDGYRVQARKHGNNVELYTRSGLDWTHRMKPIAEAVKQLAVEDAILDGEV
CVLDDKGLSSFARLQASFEKNEKHPLTFFVFDLLHLNGHNTRALPLRERKALLHSLVTED
GDVRMSEDMIGDGTRIFHAACELHAEGIISKRADGAYTPGRSAQWVKSKCVHEQEFVVGG
WVDLSNGTRGIGSLLLGYYDDAGKLIYAGRTGTGFTQKIHKMLRDKLDALEQKTMPFTAI
SAEGRRGAHWVKPELVVQVRFSTWTGDQQVRQASYQGLREDKPADEVRREIGPPSAKYKP
VAASTKADPEPSASTEVVHKAKANKVVSINAKKDAKPTSAQKNAAAATTPMPAIRLTHPD
KIVDPESGITKQQLAEFLWAVAPQMLPHIADRPLSLVRCPEGSSNQCFYQKHVNHMLPKG
VGSVMVADKKGGAPEPYITLNDAEALAGLAQMSVLEIHPWGSHNDHLEEPDRIIIDLDPD
ESLPWSTVCEAALEVRSLLDAMKLKSFLKITGGKGLHVCFPVTPEHDFSIIKAWTHGLVQ
AMETARPELYLSKMSKAARTGKIYLDYLRNERGATAVAPYSMRARTGLPVSVPLEWEELA
GSERPRYTVKDFATWQHRLARDPWQAVLKVKQTIPKDALERFAGKTKRS

NT seq 2850 nt +upstreamnt +downstreamnt
atggcaaaggcaaagaaggcctcgacttccgcagcatccagcgcaggcgacgctgtcgat
gaacaactcgcacgctatcgctccatgcgcgactttaaggtcacagcagagccaagcggc
gggacaaaatcgaagaagcccgaagcgcttccctttgtcatacagaagcacgcagcaacg
cgcctccactacgacttccgcctgggttggaacggcgtcctgaagagctgggcagtcgcc
aagggtcccagctacaacgtgcatgaccggcgactggccgtgcaggtagaagaccatccc
atggagtacggcggcttcgaaggcatcatccctcgcggccaatacggtgggggcaccgtc
atggtgtgggaccagggaacttgggagccgcacgtcgacgtggatgagggtctgcgcaaa
ggctcactcaagttcggcatcaacggcaccaagatgcacggcaactggaccctcgtccgc
atgggcggcaaggccgcgcaggaaggcaagcccaactggctgctgatcaaggagcacgac
gacttcgagcgcggccccgacgatccctgcatcacggaagagatgcccaactcagccgtc
accggccgcacactcgaagagatcgccacagccagcacgcacgtgtggaacagcaaggag
accgccggcgagggccctgcctggtaccgggatcgtgcacgtgatgccgacgcggcctcg
accagcgacaaagcagccagcaagcctgcagcgaagccctccgctaagaccacaagtaag
gcatcaccgaaacaggcaaagtctcctccagtagttcccgcacaaatcgaaaagctgccg
caagagaagctgccagacttcttgaagccacagctcgcaggagagacaaccgcaccgccc
gcgggcgacgaatgggtgcacgaactcaaactcgacggctaccgggtgcaggcacgcaaa
cacggtaacaacgtggaactctacacacgcagcggcctcgactggacgcaccgaatgaag
cccatcgctgaagcggttaaacaactcgcagtggaggatgccatcctcgacggtgaagta
tgcgttctcgatgacaaaggcctctcaagcttcgcgcgcctgcaggcctcctttgagaag
aacgagaagcacccactcaccttcttcgtcttcgacctgctgcacctcaacggacacaac
acacgcgccctgccgctgcgcgaacgcaaagccctcttgcatagcttagtcaccgaggac
ggcgatgtccgcatgagcgaagacatgatcggcgatggcaccaggatctttcacgctgcc
tgcgaactgcacgccgaaggcatcatctcgaaacgcgcggacggcgcctacactccaggc
cgaagcgcacagtgggtcaagtcaaagtgcgtgcatgagcaggagttcgtcgtcggcgga
tgggttgacctttccaacggcacacgcggcatcggttccctcttactcggctactacgac
gatgcaggcaagctgatctacgccggccgcaccggcaccggcttcacgcagaagatccac
aagatgctccgcgacaaactcgacgccctcgagcagaagacgatgcccttcaccgccatc
agcgcagaaggccgccgcggtgcccactgggtcaagcccgaactcgtcgtacaggtgcgc
ttctccacgtggaccggggaccagcaggtccgacaggcgtcgtatcaaggcctgcgcgaa
gacaagccagcagacgaagtacgccgcgagatcggcccaccctccgcaaaatacaagcct
gtcgcagccagcacaaaagccgatcccgagcccagcgcgtccactgaagtcgtccacaag
gccaaggcaaacaaagtggtcagcatcaacgcaaagaaggacgcgaagcctactagcgct
cagaagaatgcagctgcagccaccacgccaatgccggcaatccgcctgactcaccccgac
aaaatagtcgatcccgagagcggcatcaccaagcagcaactcgcagagttcctatgggcc
gtcgcaccgcagatgctcccacacatcgccgaccgtccactcagcctcgtccgctgccca
gaaggctcttcgaaccaatgcttctaccagaagcacgtcaatcacatgctgccaaaaggc
gtcggctccgtgatggtcgcggacaagaaaggcggcgcacccgagccctacatcacgctg
aacgacgcggaagcactcgccgggctggcgcagatgtctgttcttgagatccacccgtgg
ggctcgcacaacgaccacctcgaggagcccgaccgcatcatcatcgacctcgaccccgac
gagagcttgccctggtccaccgtctgcgaagccgcgctggaagtgcgcagcctgctcgac
gccatgaagctgaaaagcttcctcaagatcacaggcggcaagggcctgcacgtatgtttt
cccgtcacaccagagcacgacttctcgatcatcaaggcttggacgcacggcctcgtgcag
gcaatggaaaccgcccgtcctgaactctacttgtcaaaaatgtcgaaggccgcacgcacc
ggcaagatctatctggactatctgcgcaatgaacgtggcgccaccgccgtggcaccctac
agcatgcgagcccgcacaggactaccagtaagcgtgccgctggagtgggaagaactcgcc
ggcagcgaacgcccgcgctacaccgtcaaagacttcgcaacatggcagcataggctggcg
agagacccctggcaggccgtgctcaaggtgaaacagaccataccaaaggatgctctggag
cgcttcgccggaaagacgaagcgctcctga

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (16)   

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