KEGG   Takifugu rubripes (torafugu): 101078829
Entry
101078829         CDS       T02386                                 
Name
(RefSeq) collagen alpha-1(XI) chain-like isoform X1
  KO
K19721  collagen type V/XI/XXIV/XXVII, alpha
Organism
tru  Takifugu rubripes (torafugu)
Pathway
tru04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:tru00001]
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    101078829
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:tru00536]
    101078829
Glycosaminoglycan binding proteins [BR:tru00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   101078829
SSDB
Motif
Pfam: Collagen COLFI Laminin_G_2 Laminin_G_3 Laminin_G_1
Other DBs
NCBI-GeneID: 101078829
NCBI-ProteinID: XP_011602384
Position
5:10169036..10203330
AA seq 1868 aa
MDGLIRTRCRHRTSLIILILLHVAAAQSAVHIDVLQLLEVSERMEGVSLGTGLCTSRTGT
EGTDLAYKIDKKVQLSVPTKQLFPDSRFPKDFSVMATVRAKKGSQFFLLSIYHELGVQQL
GLEMGRSPVFLYEDQHGQPTPDMHPIFKKVNLADGKWHRIAYSVHGNSVTLYLDCKKVET
QSLQRGDDAAVSTDGVTVFGTRLLDKAVFEGAIQQLLILEDPQAAARYCVDYIPNCDSAL
PYSIQALATREISKVSPGDLQRDQAGEPNENSKKDRKGKKKRDRGSKGKGKGKGKRKGKG
KGKKGSRKKKHEEDSLHEEGFLSVSSTVPEYLSLGSFQPTELPDTKSTLETTMPSDAFYQ
SIMEKPTLKPDSTTEAPTLEPAPLPEREVSEEENKSSIQLAVEEYDDFYKELYDDVSLST
VTVGPNVTAYEIEYEDPANDPDYEEYEIDEDSFDSARRERPETWKRDSRLEGEKGQKGEP
AITEPGAYVPGPAGPPGPQGLTGPAGPTGPPGPRGDFGELGPPGRPGLPGADGIRGPPGT
MLMLPFHFGGNSQKGPMVSPQEAQARAILQQTQMSMKGPPGPVGLSGRPGPQGGPGPTGL
KGNRGESGPAGLRGLPGPPGLKGKLGKTGRSGMDGGRGIPGDPGLKGDRGFDGLPGLPGN
KGHRGDRGKPGLLGPVGQPGEKGSNGPVGPRGQAGEPGARGLVGPRGPPGPPGQPGIIGT
DGPQGSKGNQGPAGEIGPPGQQGNPGVEGLPGSQGPIGLPGEKGSQGKQGMPGLPGINGP
PGHPGREGPAGEKGLQGLPGPQGPAGYPGIRGVKGADGVRGLKGGKGEKGEDGFPGAKGD
LGIKGDRGDDGTTGARGEDGPEGLKGQAGPLGDAGGPGVPGEKGKFGVPGLPGYPGRQGP
KGSLGFLGSAGVPGDKGRRGPAGPQGTGGQRGPNGARGERGANGPTGKPGEKGSAGQDGP
SGSPGDRGPQGPQGRHGEPGPRGPNGPPGKDGLLGHPGQRGEPGFQGKNGPPGPAGVVGP
QGKSGETGPPGDRGHPGPPGPPGENGLPGTAGKEGAKGDPGLPGTAGKSGPTGLQGFRGS
RGNPGSTGTAGLKGEEGLPGPAGPVGATGERGPAGPAGNVGEPGQSGSVGPAGPMGEKGE
PGEKGLAGPAGPDGQPGTVGLPGPAGPSGPPGEDGDKGETGGSGQKGGKGEKGESGPPGP
VGILGPVGQSGPPGVDGEPGPRGQQGMNGAKGDEGHRGFKGLPGPEGLQGMPGTPGEKGE
SGHVGSLGPLGQHGPRGPQGPAGSEGQPGMPGGVGEPGSVGEKGDDGDVGDPGPVGQLGV
IGAKGDVGDKGDSGLSGTPGPPGPRGTPGEDGSKGTIGPIGFPGDPGPPGEPGDNGIDGG
PGSKGDNGEPGKVGPPGASGEPGPPGPPGRRGHIGAAGIEGKEGLKGAKGERGIQGPPGK
IGPVGPQGQPGRLGPDGLRGIPGPVGEHGLNGPPGMSGPPGPIGPPGLPGFKGDPGNKGE
KGHVGIFGLVGPPGDLGEKGDRGLPGIEGTRGAKGDEGVVGPLGPTGPPGPPGLSGVVGE
KGSKGEMGVVGPRGDPGAAGPPGPQGPPATAIEPLPMREGRRNRRRQNNREEAASREEDL
DMDAFYQGDQPMEDFEGMEEVFATLSSMKTEVELMRRPLGTFESPARTCKELMMVQTNYK
DGDYWIDPNQGCHRDSIKVYCNFTADGETCLYPDMRIEMVKLAAWNKETPGSWYSQFRKG
KQFSYIDRDGNPVDVVQMTFLKLLSATAKQDFTYTCQNSAGWFDSASGSYQHALRFRGSN
DEELTQVKSPFINVVHDGCQSRKGQERTVLQIDSPSAEILPILDIAASDFGKGNQKFGFQ
VGRVCFNG
NT seq 5607 nt   +upstreamnt  +downstreamnt
atggacggtttaataaggacccggtgtcgccacagaacatcgctcattattttaatcctg
cttcacgtggcggcggcacaatccgctgttcacatcgatgttctgcaactgttggaagtg
tccgagaggatggaaggggtgtccttggggactggcctgtgtaccagccggacagggaca
gaggggacggacctggcctacaagatagacaaaaaggtccagctcagcgttcccacgaaa
cagctcttccccgattctaggtttcccaaagatttctctgtgatggctactgtccgagct
aaaaagggctcccagttctttctcctctcaatctaccatgaactgggggtgcagcagcta
ggcctggagatgggccgttcacctgtcttcctgtatgaggaccagcatgggcagcccaca
ccagacatgcaccccatcttcaagaaggtcaacttggctgatggaaaatggcacaggata
gcatacagcgtgcacggcaattcagtgacgctctacttagactgcaagaaggtagagacc
cagagtctgcagcgaggggacgatgctgcagttagcacagatggagtgaccgtgtttggg
actcgactactggataaagctgtgtttgagggagccattcagcaattactgatcctggag
gaccctcaggctgctgccagatactgtgtagattacataccaaactgcgactctgctttg
ccctacagcattcaagccctggcgacgcgtgagatctccaaagtttcacctggtgacttg
caaagagaccaggctggggagccaaacgaaaactccaagaaggacagaaaaggcaaaaag
aagagagacaggggttcaaaaggaaaaggcaaaggcaaaggcaaacgaaagggcaagggc
aagggcaagaagggatcaaggaagaagaaacatgaggaggacagtcttcacgaggaaggc
ttccttagtgtgtcctcgacagtgcctgagtatctgtccctaggatcttttcagcccaca
gagctgcctgatactaagagcactctagaaacaacgatgccctccgacgccttctaccaa
tccatcatggagaagcccacactcaagcctgattctacaactgaagcccccactttggag
ccagcaccattacctgaaagagaggtttctgaggaggaaaacaagtcatcgatacagttg
gcggttgaagagtacgatgacttttataaagaactctatgatgatgtctcgctttccact
gtaacagtggggcccaatgttactgcatatgagattgaatatgaagatcctgcgaatgac
ccagattatgaggagtatgaaatagacgaggacagctttgactctgcaaggcgagaaagg
ccggaaacatggaaaagagattcgcgcctcgagggggagaaaggccagaaaggagagcca
gctattactgaaccgggtgcatatgtgccaggacccgctggtccaccaggtccacagggg
cttacaggcccagctgggccaactggtcctccaggaccaaggggagatttcggtgaattg
ggtcctccaggacgtccaggtcttcctggtgctgatgggattcgtggtcctccaggaacc
atgttgatgctaccattccattttggagggaactcccagaagggacctatggtatctcca
caggaagcacaggcacgggctatcctgcaacagacccagatgtcaatgaagggacctcca
ggtccagttggtctatctgggcgaccgggcccccagggtggtccaggccccacaggtctt
aaaggaaacagaggagagagtggccctgctggactgcgggggttgccaggtccaccggga
ctcaaaggaaagctgggaaaaacaggccgttcagggatggatggcggtcgtggaattcca
ggtgacccaggcttaaagggtgacaggggttttgatggcctaccaggtctcccaggaaac
aagggacacaggggggacagaggaaagcctggtctccttgggcctgttggacagccagga
gaaaagggatccaatggaccagttgggccaagagggcaagcgggggaacctggtgcccgg
gggcttgttggaccaagggggccacccggtccacctggccaaccaggtattattggaact
gatggaccacaagggtcaaagggcaaccagggtccagctggagagattgggccaccaggt
caacagggaaatccgggagtagaggggttgccgggttctcaaggtcccattggattacca
ggagaaaagggctcacagggaaagcaaggcatgccgggactaccagggataaacggtcct
ccgggccacccaggaagagagggccctgcgggagaaaaaggactgcaaggtctaccaggg
cctcaggggcctgcggggtacccagggatccgtggagtgaagggagcagatggagttagg
ggtctaaaggggggcaaaggggagaagggtgaagatggtttccctggagccaaaggagat
ctgggcattaagggtgaccggggtgacgatggaacgacaggtgctcgtggagaggatgga
ccagaagggctgaagggtcaagctggacccttgggagatgcgggaggtcccggggtacct
ggtgagaagggtaaattcggagttccaggattgcctggatatccaggaagacaaggtcct
aagggatcacttggtttccttggttcagccggagtcccaggagacaaaggacgaaggggt
ccagctggcccacaaggaactggaggccaaagaggccctaatggagcccggggggaaaga
ggagcaaatggacccactggaaaaccaggagaaaaaggatctgctggacaagatggtcct
tcaggatcccctggcgatcggggtccccaaggtccacagggaagacatggtgaaccagga
cctagaggacctaatggtccacctggaaaagatggtttactaggacatccaggccagagg
ggggaaccaggttttcaaggcaagaatggccctcctggccccgctggtgttgttgggcca
caaggaaaatctggggagacaggaccacctggagataggggacatccaggtccaccagga
cctcctggtgagaacggtttaccgggaactgccggtaaggagggtgccaagggagatcca
ggtcttccaggaacagcagggaaaagtggccctactggacttcaaggatttagaggcagc
aggggcaaccccggttccacgggtactgcaggtctgaagggagaagagggcctacccggt
cctgctggacctgtgggtgccacaggagagaggggccccgctgggccagccggcaacgtt
ggcgagccaggacagtctggaagtgtgggtcctgctgggccgatgggggagaaaggcgag
cctggagagaaggggcttgctggtccagctgggcctgatggacaaccaggaacggtgggg
ctgccggggcctgcagggccttctggacctccaggagaagatggagacaagggagagaca
ggtggatcaggtcagaaaggcggcaaaggagaaaagggagaaagtggacctccaggacct
gttggaattctcggacctgtgggccagtcaggaccaccaggcgtcgatggtgaaccaggt
cctcggggtcaacagggcatgaatggagctaaaggagatgaaggacacagagggtttaag
ggtttacctggtcctgaaggactacagggaatgccaggaacaccaggggagaaaggagag
agtggccatgttggctcacttgggcctctaggacagcatggcccacgaggtccccaggga
ccagctggaagtgagggccaacctggaatgcctggtggcgttggtgaacccgggtctgtt
ggagagaagggtgatgatggtgacgttggggacccggggcccgttggacagcttggcgtt
attggtgctaaaggggatgtaggagacaagggggactctggcctttctggaactcctggg
cctcctggacctagaggaacaccgggagaagatggatctaaaggcaccattggtcccatt
ggatttcctggagatcctgggccccctggagaacccggtgacaatgggatagatggtggg
ccagggtctaaaggagacaatggagaacctggaaaagtgggaccacccggggcctctgga
gagccaggtcctcctggacctcctggacgcaggggtcacataggtgctgcaggaatagaa
ggcaaagaaggcctgaagggtgcaaagggagaacgagggatccagggtccaccaggaaag
ataggcccagtgggcccacaggggcaaccagggaggttgggtccagatggtcttagaggt
atcccaggtcctgtgggcgagcacggcttaaacggaccgcctggaatgagtggaccgcca
ggaccaattggaccaccaggccttcctggatttaaaggagaccctggaaacaagggagag
aaaggtcatgttgggattttcggtttagtcggtccccctggagaccttggtgagaaggga
gacagaggtctgccggggatcgaaggaacccgaggggctaaaggagatgagggtgtagtt
ggcccactcgggcccactgggccaccaggaccaccaggactctcaggtgtagttggtgag
aaaggatcaaaaggagaaatgggtgttgttggcccccgaggagatccaggcgccgctggt
ccacctggaccccaaggaccccccgcgacagcgattgagcctttgccgatgagggaaggc
agacggaataggcgaaggcaaaacaacagagaagaagcagcatccagagaggaagatctc
gatatggatgcgttctaccagggagaccaacccatggaggactttgaaggaatggaagaa
gtctttgccacgttgtcatccatgaaaacggaggtggagttgatgaggaggccactgggg
acctttgagagccctgccaggacctgcaaagagctcatgatggttcaaacaaactacaaa
gatggagactactggattgatcctaaccagggctgtcacagagactccatcaaagtctac
tgcaactttacagctgatggagagacatgtctgtacccagacatgaggattgagatggtg
aaattagcagcgtggaacaaagagacgcccgggagctggtacagccaattcaggaaaggc
aagcagttttcctacatcgacagagatgggaacccggttgacgtcgtccaaatgaccttt
ttgaaattgctgagtgccacagccaagcaggacttcacctacacctgccagaattcagcg
ggctggtttgacagtgcgtctggctcctaccagcacgccctccgcttcaggggcagcaac
gacgaggagctgacacaagtcaaaagccccttcatcaacgtggtgcacgacggatgccag
tctcgaaaaggtcaggaaaggactgttttacagatcgactccccgtcggcagagatactg
cctattttagacatcgccgcatcagattttggcaagggcaaccaaaagttcgggtttcaa
gttggacgagtgtgctttaatggttaa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (75)   
   KEGG ORTHOLOGY (1)   
   RefGene (71)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (5)   
   Pfam (5)   
All databases (88)   

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