KEGG   Trichinella spiralis: Tsp_01672
Entry
Tsp_01672         CDS       T01609                                 
Name
(RefSeq) transcription initiation factor IIF, alpha subunit superfamily
  KO
K03138  transcription initiation factor TFIIF subunit alpha
Organism
tsp  Trichinella spiralis
Pathway
tsp03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:tsp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    Tsp_01672
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tsp03021]
    Tsp_01672
Transcription machinery [BR:tsp03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIF
     Tsp_01672
SSDB
Motif
Pfam: TFIIF_alpha TBPIP
Other DBs
NCBI-GeneID: 10911757
NCBI-ProteinID: XP_003377423
Position
Unknown
AA seq 439 aa
MDLSDINEYIVRVPKSNPSSKCVIYKFNGVNIDTSRITNMTVEREENPEDLEGDSGIGSE
AGSQTRRKRFGMKSKTKEEMPIRLTVEENGKKRNYRGIREGGISNYSDYWIFEKTGECVF
DAYPVSEFYNFLPVSEQKAMDIEEVEEHFKRREIVLNQFALRAQIRQPGEGNDDETEGPL
SEGNNKAQQSKLGKASGEKAVKKLHKNRKEKYKEREDDLVMEESDDGDEDGREVDYMSDK
DSSSSLEMEEDALIGVDEELIDAFQSVDESEQDDENAEGDSEEGGLTKLDMNKKTFETTS
NFGLRAERDTESSSGSEDPDSEDIKSPFLLQCKTDVESVSNKRKAEDNADNNAEPEKKAK
LANAETASDSSKFRIMEAEVRHYLERKPMSTTDLVAKFKPRCKKMSKQEIVSQLANILKK
LKPEQTRRKGTLYFSLRRT
NT seq 1320 nt   +upstreamnt  +downstreamnt
atggatttatcagatattaatgagtatattgttagggttccaaaaagcaatccatcgtca
aaatgtgtaatttataaatttaatggagtgaacattgacacttcacgtatcaccaatatg
acagtggaacgtgaagaaaatcctgaggaccttgaaggagattctggaattggatcagaa
gctggttcacagactcgacgaaaaagatttggtatgaagtcgaaaacgaaagaagagatg
ccaattcgactaactgtcgaagagaacggaaaaaaacgaaattatcgtggaatccgagaa
ggtggaatttcaaattattcagattattggatctttgagaagactggcgaatgtgttttt
gatgcctatcctgtgagcgaattttacaactttcttccagtttctgaacagaaggcgatg
gatatcgaagaagttgaggaacatttcaagagaagagaaattgttttaaatcagtttgca
ctgagagcacaaattcgtcaaccaggtgaaggaaatgacgatgaaactgaaggccctttg
tcagaaggcaacaacaaagcgcagcagtccaagcttggcaaagcaagtggtgaaaaggct
gtaaagaagctacataagaacaggaaagagaaatataaagaacgtgaggatgaccttgta
atggaagaatcagatgatggagacgaggatggtcgtgaagttgattatatgtcagataaa
gacagctcgagtagtcttgaaatggaagaagatgcgttgatcggtgttgacgaagaatta
atcgatgcatttcagtcagttgatgaaagtgagcaagatgatgagaatgctgaaggcgat
agtgaagaaggaggtttgacgaagctggacatgaataagaaaacttttgaaactacgtca
aactttggtctgcgcgcagaacgagacacagaatccagttcaggcagtgaagatccggac
agtgaggatattaaatcgccgtttctgttgcagtgcaaaactgacgtcgagtctgtgtca
aataaaagaaaagctgaagacaatgctgataataatgcagagccagaaaagaaagcgaaa
ttagcaaatgctgagactgcaagcgatagttccaagttcagaataatggaagcggaagtt
cgtcactatttggaacgaaaaccaatgtcaacaacagatttggtggcaaagtttaaacct
cgttgcaaaaaaatgagtaagcaggagatcgtttcacagcttgcaaacattttgaagaaa
ttgaaacctgaacaaacacgtcgcaaaggaacactttacttcagcttacgccgtacataa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (13)   
   KEGG ORTHOLOGY (1)   
   RefGene (9)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (21)   

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