KEGG   Trichinella spiralis: Tsp_03933
Entry
Tsp_03933         CDS       T01609                                 
Name
(RefSeq) domain protein, SNF2 family
  KO
K11647  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
tsp  Trichinella spiralis
Pathway
tsp03082  ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:tsp00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    Tsp_03933
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tsp03021]
    Tsp_03933
   03036 Chromosome and associated proteins [BR:tsp03036]
    Tsp_03933
Transcription machinery [BR:tsp03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    BAF/PBAF complex
     Tsp_03933
Chromosome and associated proteins [BR:tsp03036]
 Eukaryotic type
  Histone modification proteins
   HDAC complexes
    REST complex
     Tsp_03933
  Chromatin remodeling factors
   BAF complex
    Tsp_03933
   PBAF complex
    Tsp_03933
   GBAF(ncBAF) complex
    Tsp_03933
SSDB
Motif
Pfam: SNF2-rel_dom Helicase_C Bromodomain BRK SnAC HSA ResIII HDA2-3 DEAD QLQ
Other DBs
NCBI-GeneID: 10904025
NCBI-ProteinID: XP_003374744
Position
Unknown
AA seq 1787 aa
MEGISVHKSYQQEGAGMMRQMEPPDGSMSIPQGEYGMCYPPQGQSNMMLPSGRPVQMQNF
YSQDPNVRKSVYNIIWLALGALMKCANLMEFKTKTTVGYVSNLNSRTHLFPQQQSYVTSI
PPGPANSNQAYANQPAYPYQQYQQGYPAQTPPSAPAAGYGYSSNMPMNVASPMPTQGYPQ
TPSQPFQGQPPLPEASTVAHLERTIAELEQKGMTNDPRYHQLVIVLNKLKGARSFRQPVA
ETVHADTCKKYEQQQHLSEPGPYVYSDSPVPSPSVCSQNQQQQRRDQQTLPAPEDGSSGT
FTAGQLTQIRHQIAIYRLLARNLPIKESLLEAALKSSSEQPEKPKPISLLPEPYSMPGPS
IDGVGQLPYNLNALNTILQQKQRNIVFGSMNKPVGLDPVELMRERENRLQNRIGLRIAEL
ERIQAGPDGMRPDLLVKATIELRSLRLLNVQRSLRRDISNIMKHSSTLETSLNPRAYHRT
KKQSLREARVTEKLEKQQKMEQERKKRQRHQEFLNALLVHAKEFREYHRNNQIKLGKLKK
AVLTYHMNTEREKKKEEERRERERMQKLMQEDEEGYRKLLDQKKDRRLVYLLHQTDEYVA
NLTGLVKQHQMNEKQRRKLEKKEMREQRRREKEEKRVVEEQLKKLNSAFGHDESSTKEEN
GSDQTIRVREVATGAILTGDDAPKASELDAWLEAHPGYEVVSRDEHGKDSSSSESDSDES
DSETDVALVSSSSSKVELSQMDEDDRNKAIIQAAQTEDDEYTPATNVEEQSYYNTAHRIH
EKVLEQPSILVGGKLKEYQKKGVEWLVSLYVNNLNGILADEMGLGKTIQTIALISHLIEK
KRVNGPYLIIVPLSTLSNWILEFEKWAPSVVKIVYKGSPNVRRALSFQTRQEKFNCLLTT
YEYIIKDKAILSKIRWKYMIIDEGHRMKNHHCKLTQVLNTYYTSPHRLLLTGTPLQNKLP
ELWALLNFLLPSIFKCCNTFEQWFNAPFATTGEKVELNQEETMLIIRRLHKVLRPFLLRR
LKKEVESQLPEKVEYVIKCDMSALQKVLYQHMQAKGVMVTRETDKTKKGTPAAGVRTLMN
TVMQLRKLCNHPYMFEHIEEAMAEHFGYPDKIVSGPELYRASGKFELLDRVLPKLKASGH
RVLLFCQMTCLMTIMEDYFHYRDFKYLRLDGTTKSEDRGELLAKFNAPASDYFIFLLSTR
AGGLGLNLQAADTVIIFDSDWNPHQDIQAQDRAHRIGQLREVRVLRLMTVNSVEERILAA
ARYKLNVDEKVIQAGLFDQKSTASERRQFLQAILQNEIDNDEDANEVPDDETVNQMIARS
EEEFEFFQRMDSERRRTEARELQAATPSTSPTSKPKARLIEEHELPAWLLKNEEEIERLT
NEDVQDRLFGKGARRKKEVDYSQDSWSERQWMKAIDEELDDDFDDFDDDEELKRKKFKRR
GPGRGRPVDDHHHSGAGHERAPRGRGRKQQHHHQPPPTHAEGDDDEDFTMITTPKRRRGA
PPKPRPSKQLLNLMNQIVEDTVQYRTNEGRQLSEHFMQLPSRRELPDYYELIAIPVDFKK
IRKKLTDGRYKNLEELDKDVQLLCDNAQTYNLEGSEIYEDSVALRNLWNNLREQAVTRDN
AETEAATGDAAIATSSWSSQNEKKKSLQPKKKAMHGLFVEDEDEDDANVSLASAVTAANG
DENNSSNISNNNNNENSNSGNDNNNATAETAAAFVFCQYLPLQLVLNYFSSTFCFFPIYK
NKKAFGKVELCNLEDVVIAIISSRLVQADEMKCKFSTLMKKINSPRL
NT seq 5364 nt   +upstreamnt  +downstreamnt
atggaaggaatttctgttcataaatcttatcaacaagaaggagctggaatgatgcgccaa
atggaacctccagatggctccatgagcattccgcagggcgaatatggcatgtgctatccg
ccccaaggccaatcaaacatgatgttaccttcgggtcgtcccgtgcaaatgcaaaatttt
tattcacaggacccaaacgtaaggaaaagtgtttataacattatttggttagcgttagga
gcacttatgaaatgtgctaacttaatggaatttaaaacaaaaactacagtaggttatgtg
tcaaatttaaacagtcgtacgcatttgtttcctcagcaacagtcttatgtgaccagtatt
ccgcctggtcctgccaattcaaatcaggcatatgcaaatcaacccgcttatccataccag
caatatcagcaaggatatcctgctcaaacacctccgtcggctcctgctgctggttatgga
tacagttcaaacatgcctatgaatgtggcttcgccgatgccaacacagggataccctcaa
actccatctcagccttttcaagggcagccgccacttccggaagcaagcacagtggctcat
ttggagcggactattgctgaattggaacagaagggaatgaccaacgatccacgttatcat
cagttagttattgtactgaacaaattgaaaggcgctcggtcattccgtcaaccagtggct
gagactgttcatgctgatacgtgcaaaaaatacgaacaacagcaacacctcagcgaacca
gggccttatgtatattcagacagtccagtaccgtccccgtcagtttgttcgcagaatcag
caacagcaacgccgtgaccaacagacactaccagctccggaagatggtagcagtggcacg
tttacggctggccagttgactcaaattcggcatcaaattgccatctacagacttttggcc
agaaatttgcccatcaaggaatcactcctcgaggctgctttgaaatcttcctctgagcaa
ccggaaaagccgaaaccgatttcactgcttcctgagccatattctatgccaggtccatca
attgatggtgttggccaacttccgtataatttgaatgcgttgaatacaattcttcaacag
aaacagcgcaatattgtgtttggttcaatgaataagccggttggtttagatccagtggaa
ttgatgagagaaagggaaaatcgattgcagaatcgtattggtttgcgcattgcggaactg
gaacgaattcaagcaggtccggatggaatgcggcctgatcttttggtaaaagcgacaatt
gagcttagatcgttgagactgcttaatgttcagagatcgttgcgacgggatatttcaaat
ataatgaaacactcgagtacattggaaacatcgttgaatccacgcgcttaccatcgcacg
aagaagcaatctctgcgtgaagctcgtgtcactgaaaagcttgaaaagcagcagaaaatg
gaacaggaaagaaagaaacgtcaacggcatcaagaatttttgaacgctttattagtccac
gcgaaagagtttcgcgaatatcaccgaaacaatcaaattaagcttggaaaattgaaaaaa
gcagttctcacctatcacatgaacaccgaacgggaaaagaagaaagaggaagaacgtcgc
gaacgcgagcgtatgcagaagttgatgcaagaggatgaagaaggttacaggaaattgttg
gatcagaaaaaagaccggcgcttggtatatctgttgcatcaaaccgacgaatacgttgct
aatttgacgggcttggtgaaacagcatcaaatgaacgaaaagcagcgtcgcaagttggaa
aagaaagagatgcgagaacagcggcgtcgtgaaaaggaagaaaaacgagtagtggaagaa
cagttgaagaaattgaacagcgcttttggtcatgatgaaagttccactaaggaagaaaat
ggcagtgaccagacgatcagagtacgcgaggtggctactggtgctatactgacaggtgac
gatgcccccaaagcttctgaactcgacgcttggctggaagcgcatccaggttatgaagtt
gtatcacgagatgaacacggcaaagattcatcatcgtctgaatcggattcggacgaatcg
gattccgaaactgatgtcgctttggtatcctcttcaagcagcaaagttgaactctctcaa
atggatgaagatgacagaaataaagctattatacaggcagcccaaacggaagatgacgaa
tacacaccggctactaatgtcgaagagcagagttattacaacactgctcatcgtattcat
gaaaaagttctcgagcagccttcaattttggttggtggtaaattgaaagaatatcaaaag
aaaggtgttgaatggttggtttcactttatgtgaacaatctgaatggcattttggccgac
gagatgggcttgggtaaaacaattcaaaccattgcgttgatttcgcatttgatagaaaag
aaacgagtcaatggtccatatttgatcattgttccattatctacattgtcaaattggatt
ttggaattcgaaaaatgggctccaagcgtggtaaagattgtttacaagggaagccccaat
gtgagacgtgctttgtcattccaaactaggcaggaaaagtttaactgtttgttgactact
tatgaatacatcatcaaagataaagcaattttgtccaagattcgttggaaatacatgatt
attgacgaaggtcaccggatgaaaaatcatcactgtaaactcacccaagtattgaacaca
tactacacgtcgcctcaccgtcttttgttgacaggcacgccgcttcagaataaattgcca
gaattatgggcattgttgaactttcttctgcctagcatattcaaatgttgcaacacattt
gaacagtggtttaacgctccatttgctactacaggagaaaaagtggagttgaatcaagaa
gagactatgttgattatacgacgtttgcataaagttttgcggccgtttttgttgcgtcga
ttgaaaaaagaagtggaatcgcaattgccagaaaaagtggaatatgtcatcaagtgcgat
atgagcgcattgcagaaggtgctttatcagcacatgcaagcgaaaggtgtgatggtgact
agggaaacggataagacaaagaaaggcactcctgcggcaggtgtgcgcacgttgatgaat
actgtaatgcagttacgaaagctttgcaatcatccgtatatgtttgagcatattgaagaa
gcaatggcggagcactttggttaccctgataagattgtttctggaccagaattgtaccga
gccagtggtaaatttgaactgttggatcgagtattgccaaagttgaaagccagtggtcat
cgggttttgttgttctgtcagatgacttgtttgatgacaattatggaagattactttcat
tatcgagatttcaaatatttgcgattggacggtacaaccaagtcggaggaccgtggcgag
ttgttggccaaattcaacgcgcccgcgtcggattatttcatatttctgttgtccactcgg
gccggcggcttgggtttgaacttgcaggctgcggacacggtcataattttcgactcggac
tggaacccgcaccaggatatccaagcccaggaccgtgcgcaccgaattggtcagctgcgc
gaagtgcgtgttctacgcttgatgaccgtcaattcggtcgaggagcgcatactggccgcc
gcccgctacaagttgaacgttgacgagaaagtgatccaagcgggcttgtttgaccagaaa
tcgaccgcctcggagaggcgacagtttttgcaggcaattttgcaaaacgaaatcgacaac
gacgaagacgcgaacgaggtgccggacgacgagacggtcaaccagatgatcgccaggtct
gaggaggagtttgaatttttccagcgcatggactcggagcgcaggcgtaccgaagcgcgt
gaactgcaagccgccacgccctcaacgtctccaacttccaagcccaaagctcgactgatc
gaagagcacgaattgccagcctggttgttgaaaaatgaagaggagattgagaggctgacc
aatgaagatgtgcaggatcgactgttcggcaaaggggccaggcggaaaaaggaggttgac
tattcgcaggactcttggtcggagaggcagtggatgaaggcaattgacgaagaattggac
gacgactttgacgattttgatgatgatgaagagttgaagcgtaaaaaatttaagcgcaga
ggtccaggtcggggtaggccagtggacgatcatcaccactctggtgctggtcatgagagg
gcgcctcgtggaaggggtaggaagcagcagcaccatcaccaaccaccacccacccatgca
gaaggtgacgacgacgaagactttacaatgattacgacgcccaagagacgacgtggtgca
ccgcccaagccgaggcctagcaagcagttgctgaacttgatgaatcagattgtcgaagac
accgtccaatacagaaccaatgaggggcgtcagctcagtgaacatttcatgcagctccct
tctcgacgtgaattgccagattattacgaattgattgccattccggtcgattttaagaaa
atcaggaaaaagttaacagatggaaggtacaagaatttggaagaacttgacaaggatgtc
cagttgctttgtgacaatgcgcaaacttacaatcttgaaggttccgaaatttacgaagat
tctgtggcgctgcgcaatctgtggaacaatttacgtgaacaagctgtaactcgtgataat
gctgaaacggaagccgctactggcgacgctgctattgcaacatccagttggtccagccag
aatgaaaagaagaagtcgttgcaaccgaaaaagaaagcaatgcacggattgtttgttgaa
gatgaagatgaagatgatgcgaacgtttctctggcatcggctgtgacggcagcgaatggc
gatgagaacaacagcagcaacatcagtaataataacaacaatgaaaacagcaatagcggt
aatgataataataatgctacggcggaaactgctgcggcttttgtattttgccagtattta
ccactacaacttgtactcaactacttcagtagcactttttgttttttcccgatatataaa
aacaaaaaagcatttggaaaagtcgaattatgcaatctcgaggatgttgttattgctatt
atttcatcgcggcttgtacaggcggatgaaatgaaatgcaaatttagcaccctaatgaag
aagattaattctccacgtctgtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (86)   
   KEGG ORTHOLOGY (1)   
   RefGene (82)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (10)   
   Pfam (10)   
All databases (103)   

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