KEGG   Trichinella spiralis: Tsp_03956
Entry
Tsp_03956         CDS       T01609                                 
Name
(RefSeq) transcription initiation factor TFIID subunit 6
  KO
K03131  transcription initiation factor TFIID subunit 6
Organism
tsp  Trichinella spiralis
Pathway
tsp03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:tsp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    Tsp_03956
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tsp03021]
    Tsp_03956
   03036 Chromosome and associated proteins [BR:tsp03036]
    Tsp_03956
Transcription machinery [BR:tsp03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     Tsp_03956
   Coactivators
    SAGA/TFTC/STAGA complex
     Tsp_03956
Chromosome and associated proteins [BR:tsp03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     Tsp_03956
    STAGA complex
     Tsp_03956
    TFTC complex
     Tsp_03956
    SAGA complex
     Tsp_03956
    SLIK complex
     Tsp_03956
SSDB
Motif
Pfam: TAF6_C Med6
Other DBs
NCBI-GeneID: 10904210
NCBI-ProteinID: XP_003374767
Position
Unknown
AA seq 420 aa
MSKNKKDDIPKTEKWDGNATRYAIDDAIRKIAKKLKRLCRKEKIQWKDCSVAVEKIFLLK
ITRSACTTQPGDHRTMKKKYVLESILNESIDRKIQEGTCLNAHWLGIEGKQPLLPENRSQ
GRSYVVAEEGMSNIETEELLHQDMNFDQLTEETRELVLELLDGCVSKDETKRFVYFFSSY
FYFNNCNNEFCPFQEALRMIQTHVGLQPALSFFVIFYLEGINCNLLCKDLRHITCMLQML
NALLLNPAIRLWKYTPKLLPSLLSCAVNMIFDVKCGDDRAWLVRERAADILGDLLNYFER
MAVDDGEDELKIKFIRHLTTIWNDEQTTIPSAYGVLCILRKLGNLVITSTVIPNLRKFDL
KLSHLLQHGNEDEQYQVNFVRKFIKDMLKNYVQSALLTDDDKRNLEKHFKHYLDSAQLKV
NT seq 1263 nt   +upstreamnt  +downstreamnt
atgtcgaaaaacaagaaggatgatataccgaaaactgagaaatgggatggaaatgctact
cgatatgcaattgatgatgcaattcggaagattgcaaagaaattaaaacggctctgccga
aaagagaaaattcaatggaaagattgcagtgttgctgttgaaaaaatattcttattgaaa
attacgaggagcgcgtgtaccacacaacctggtgatcatcggacaatgaagaagaaatat
gttttggaatctattttaaatgagtccattgataggaagatccaagaaggcacatgtttg
aatgctcactggttaggaattgaaggaaaacagccattacttcccgagaatcgatcgcaa
ggtaggagctatgtggtcgcagaagagggaatgtcgaatattgaaacagaagaattgtta
catcaagatatgaattttgatcagttaacagaggaaactagggagttggttttagaactg
ttagatggttgcgttagtaaagacgaaacaaaaagatttgtatatttcttttcttcatat
ttttattttaataactgcaataatgaattttgtccatttcaggaagcattgcggatgatt
caaacgcatgttggtctacaacctgcgttgtcattttttgtcatcttctatttggaaggg
ataaattgcaatcttctgtgcaaggatttaaggcacattacctgcatgttgcaaatgctg
aacgcattgttgttaaaccctgcaattcgtctgtggaaatatactccaaaattattgcca
agtttgctttcttgtgcagttaatatgattttcgatgtgaaatgtggcgatgatcgagcc
tggcttgtcagagagcgtgctgcagacattcttggcgatttattaaactacttcgaaagg
atggcagttgacgatggtgaagacgaattgaaaataaaatttattcgtcatttgacaaca
atatggaacgatgaacagacaacaataccatctgcttacggtgtcttgtgcatattgaga
aaattgggaaatttggttattacaagtactgttattccgaatttaagaaaatttgatttg
aaattgagccatctgttacaacatggtaacgaagatgaacagtatcaagtgaactttgtc
cgcaaatttataaaggatatgctgaaaaattatgtgcaatcggccctgctgacagatgac
gataaacgaaacttggaaaagcattttaagcactatttggacagtgcacagttgaaagta
taa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (23)   
   KEGG ORTHOLOGY (1)   
   RefGene (19)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (32)   

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