KEGG   Trichinella spiralis: Tsp_05273
Entry
Tsp_05273         CDS       T01609                                 
Name
(RefSeq) CCR4-Not complex component, Not1 superfamily
  KO
K12604  CCR4-NOT transcription complex subunit 1
Organism
tsp  Trichinella spiralis
Pathway
tsp03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tsp00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Tsp_05273
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tsp03019]
    Tsp_05273
Messenger RNA biogenesis [BR:tsp03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     Tsp_05273
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     Tsp_05273
SSDB
Motif
Pfam: Not1 CNOT1_TTP_bind DUF3819 CNOT1_CAF1_bind GapR_DNA-bd
Other DBs
NCBI-GeneID: 10913073
NCBI-ProteinID: XP_003371608
Position
Unknown
AA seq 1937 aa
MDSSGEPKFVSFLPCVKQIGYAFTSDVEACFHYIKDEFPAYSVCPTSVAEFIAYMLEDCS
KKHVELSWIARILENPDVFCFADYPYRSVTFDNVQLNFTEPIPKDIETWKSLDLVEILIQ
IADCLDDVSHVNECFIYPLQNCPELLALTLLQIPSPVTPTRREILHSMMPSFLTAPATSM
HIMNYAWNGGDKLVSVFLLYLRRRFPAMFATSQAEVAASMATSIPTVPPDFVHQMLTTMQ
NAFVSPSIAYELSQVINQWRDYLNRNAPSPVGPAALYSGAGAYSSNNGSNSLAMGTKMLV
EPTAAVPLGQSLYVGPKPTANVGYGQTMYAPGPSLAPSPSHGYHPAQQPLPQHGHHPQQQ
HIDPTMLAAAGLGPPNGAPPFLNQPPQQFSPAVFNHGNPPPVRPYYPPAPMHPQEAPLKA
LPPVSGWGAGFAQAVYTNGSSKPPPVTQMQMMSNLPDLSPSDGQQMYSNDVQEEVNGYFR
QVYAHADANGITVENFLEILRRCRDSKDKREKEVASCMLKNLFDEYRFFNEYPEQELMKT
GQIFGGVLRDNLVTGITFFFGLRIMVESLRRGPGTKLYEFGLTMLRCFKSRLKDYPRYCL
TIMSQVPHFSQFPVMLREYVAAGSKGNDPFPLSQPQSSTLALPSPSSMVTSSSTVQSTTT
PTIAMTTTTTSEMRTPSLVGSSIETLLNAGDQGSAKVLEPSDIIREKVAFLFNNLSQANL
SSKVTEMHELLDRSFFPWLAQYLVVRRISTEANFHHLYCSFVTAFKRQVFSEATLQETFR
NIKIFHVNCPWTLNILGVLREIHEQEGLKLNLKFEIEVLYRHLKIELEAIKVGTVLRCPH
MIHMCMTEPQLGGSSEFDPRCVTLLEGTMYLDSPLSFGMEIETQEVQVFSMTEAGLSSIE
NSLPALPRFSYDDIGDFNTLLSCIMINPSIELFHLYPDMKRAVKPAIEMSVRELLTPVTE
RALKVALTTTECIVRKDFALETDENRMRMCAHNMLRSLASGLALVTCREPLAFNIHGYFK
QTFFANQRTATNEENRMIDEAADMICNDNIEMTQCFLIKAACERALEEIDKRLSRDYEMR
VAARREGRCWLDVTGVTITGTEESLSAMIACRTARVLHTREQLQRQVAIYAEMGTAIAGF
RPTPPDYGTILLLDEQHLFQLMLMKVDSLLRVEHIGVEPIAVVYPTVTTIRDAIAVAEAN
SHEFDAAATSLVSKVVRIFFDNFVVGADHNFCLVLIDMFRFVVVDLIVVRELRWVQRSVL
NALNECRIESRFNLFSVDFLLRHRLLCPVGYDVQMAAWLDERGQGRPLPLVVQFAQQLLR
VFLIDSGAGTGEQYQQRLQVAAETDFSNTITALAKLLVPAAVVDKRAALFERLRNMPPHS
LTNAIVYTLPTGSMPTTDVDKAENATIVQLSSCMVFKSDESMARFFRVCMEMCIDLCHRA
LADTSAPMHVVRTRCYHTLDAYVAIVTLSIRRVSDDKPPAVRINLYIRLLGVITAGLVHD
LETRRNDFKCMPYQRLLTAVFVQMTDPDPLHVDSTVQQQLISSFCNTMHMIRPEEAPLFV
LAWLEIVSHRVVLGRLLGSSTPDSKCWEMYATLLLDLFRFLAPFLRNLIFDKAISTVYRS
LMRLLLVLLHDFPELLCDYHFPICDIIPANCVQLRNLIISAYPRSIRLPDPYLPIPQLEL
LPEMSVSPRITVNLDDQMQSYSFKAELDAYLKNRAPVGFLSGLRGKLQVSNDAGSKYNVS
MVNTLVLYVGVQAIQAIARNDQRPNVSTVAHTAHMDIFQNLAVDLDNEGRYLFFNAIANQ
LRYPNMHTLYFSSALMYLFLEANTETIQEQITRVLFERLAALRPHPWGLLMTFTEIIQNP
VYKFWSHNFVRCSPEVEKLMEDVARSGMGRHAYNKACPYRQHDAICSEWTRERPVDKNLN
KKSMENPNENNRIIRSD
NT seq 5814 nt   +upstreamnt  +downstreamnt
atggattcatctggagagcccaaatttgtgtcgtttcttccttgcgtaaaacagattggt
tacgcatttacaagcgatgtggaagcgtgttttcattacatcaaagatgaatttccggca
tacagcgtttgtccaacttctgttgcagaatttatagcgtatatgttggaagattgctcg
aaaaagcatgtcgagttgtcttggattgctagaattcttgaaaatcccgatgttttctgt
ttcgcagactatccttatcgtagtgttacatttgataacgtacagcttaatttcaccgaa
ccaattccaaaggatattgaaacctggaagtcgttagatttggttgaaatactgattcaa
attgcggattgtttggatgatgtttcacacgtgaatgaatgtttcatttatccactgcaa
aattgtccggagcttttggctttaacgctgctgcagatacctagtccagttacgccaacc
cgtcgagaaattcttcattcaatgatgccttcctttttgacagcgcccgctacatccatg
catataatgaattacgcctggaacggaggagataaacttgtgtcggtatttttgctttac
ttgaggcgacgttttccggccatgtttgcgaccagccaggcagaagtggccgccagcatg
gctacgtcgataccgacggtgccgccggactttgtccatcagatgttgaccacgatgcag
aatgcgttcgtatcgccgtcgatcgcatacgaactgtctcaggtgatcaaccagtggcgc
gactatttgaaccgcaacgcgcccagcccggtcggtccagctgcgctttacagcggtgcc
ggtgcttacagcagcaacaacggcagtaacagcctggccatgggcaccaagatgctggtg
gagccgacggcggccgttccgttgggtcagtcgttgtacgttggaccgaagccaacggcc
aacgtgggctacggacagacgatgtacgcgccagggccgagtttggcgccgtcgccgtcc
cacggctatcatccggcccagcagcctctgcctcagcacggtcaccatccgcagcagcag
cacatcgatccgacgatgttagctgctgccggcttgggtccgccgaacggtgcgccgccg
tttctgaatcagcctccacagcagttcagtccggcggtattcaaccacggcaatccacca
ccggtgcggccgtattatccacctgcaccgatgcaccctcaagaagcacctttgaaagcg
ttgccaccggtttctggctggggtgccggttttgctcaagccgtgtatacgaatgggtca
agtaaaccaccgccagtgacgcagatgcaaatgatgagcaatttgccagatctttctcca
agtgacgggcaacaaatgtactccaatgatgtgcaagaagaagtgaacggttatttcaga
caagtctacgcccacgccgatgctaacgggataactgtggaaaattttttggaaattctc
cgccgatgtcgtgattcgaaagataaacgtgaaaaagaggtcgcttcgtgcatgttgaaa
aatttattcgatgaatatcgctttttcaacgagtatcctgaacaagaattgatgaaaacg
ggccaaatttttggtggagttttgcgggataatctcgtgacaggtattacatttttcttc
ggtttgcgtattatggtcgaatcgttgcgccgtgggccaggaaccaagctgtacgaattt
ggcctgacaatgcttcgttgcttcaaaagtcggttgaaagattatccacgatactgcttg
accattatgtcacaagtgcctcacttttcccagtttccggtcatgctgagggaatacgtg
gccgcgggcagtaaaggcaatgacccgtttccattgtctcagcctcaaagcagcacactc
gctctgccgtcgccgtcgtcgatggtcactagttcgtccactgttcaatcgacaacaaca
ccgacgattgcaatgactacaactacgacttcagaaatgagaacaccatcgttggttgga
tcgagcattgaaacgttgctgaacgccggcgatcaaggaagtgcaaaagtgttggaaccg
agtgatatcatacgcgaaaaggtggcatttttgttcaacaatctcagtcaggccaatttg
agcagcaaagtaacggaaatgcacgaattgttggatcggagcttctttccatggctagct
cagtatttggtggtgcgacgtatcagcaccgaagcgaatttccatcatttgtattgcagc
tttgtgaccgctttcaagaggcaagttttcagcgaagcgacgctgcaagaaacgttcagg
aatatcaaaatttttcacgtaaattgtccttggacgttgaatattcttggcgttttgcgt
gaaatacacgaacaagagggtttgaagttgaatttgaaattcgaaattgaagtcctgtat
cgtcatttgaaaattgaattggaggcgatcaaagtcggcaccgtgttgagatgcccgcac
atgatccacatgtgcatgaccgaaccgcaactcggcggctcttcggaattcgacccgcgc
tgcgtgacccttctggagggcaccatgtatctcgactcgccgctgtcgttcggcatggaa
atcgaaacccaagaggtgcaagtgttttcgatgaccgaagcgggcttgagttcgatcgag
aacagtctgccggctttgcctcggttctcctacgacgacatcggcgacttcaacacgctg
ctttcgtgcatcatgatcaacccgtccattgaacttttccacctctatccggacatgaag
agagccgtcaagccggccattgaaatgtcggttcgagaactgttgacgccagttacagaa
cgggcgttgaaagtcgccttgaccacgaccgaatgcatcgtacgcaaggatttcgctttg
gaaaccgacgaaaatcgcatgcgcatgtgcgcgcacaacatgctgcgctcgttggcttcg
ggcctggcgttggtgacttgccgtgaaccgttggcgttcaacatccacggctatttcaag
cagacgtttttcgccaaccagcgaaccgccaccaacgaagagaaccgtatgattgacgaa
gcggctgacatgatctgcaacgacaacatcgaaatgacccaatgctttctgatcaaagcc
gcctgcgagcgggcgctcgaagagatcgacaagcgtctgagtcgcgactacgagatgcgc
gtcgccgccagacgcgagggtcgctgttggctcgacgtgaccggcgtgaccataaccggc
accgaagagagcctgagcgccatgatcgcctgccgaacggccagggtgctgcacacgcgc
gagcaactccaacgccaagtggccatctacgccgaaatgggcaccgcgatcgccggcttc
cgacccacgccccccgactacggtactatattattgctggacgagcagcatctgttccaa
ctgatgctgatgaaagtggacagtttgttgcgcgtcgaacatatcggcgtcgaaccgatc
gccgtcgtctacccgaccgtgacgaccatacgggatgcgatcgccgtcgccgaggcgaat
tcgcacgaattcgacgccgctgccacttctctggtcagcaaagttgtccgcatatttttc
gacaactttgtcgtcggtgctgaccataacttttgcctcgtcctgattgatatgttccgt
ttcgtcgtggtcgacttgatagtcgtccgcgaattacgctgggttcaacggtctgtattg
aacgcgttgaacgaatgccggattgaatcccgcttcaatcttttttccgttgacttttta
cttcgccaccgacttttgtgtccagtcggttatgacgtccaaatggccgcctggctcgac
gaacggggccagggtcgaccgctgccgttggtggtacaatttgctcaacagctgctgcgc
gtgtttttgatcgacagcggcgccggtaccggtgaacaataccagcaacggttgcaagtt
gctgccgaaaccgacttttcgaacaccatcactgcattggccaaactactcgtaccggct
gccgtggtcgacaaacgggccgctctgttcgagcggttgcgtaacatgccgccgcacagt
ctgaccaacgcaatcgtctacacgctgccgaccggcagcatgccgaccacagatgtagac
aaagcggaaaatgccacaatagtccaattgtcgagctgcatggtgttcaagtcggacgag
tcgatggcgcgctttttccgcgtctgcatggaaatgtgcatcgacctgtgccaccgggcg
ttggccgacacctccgcacccatgcacgtggtgcgcactcgctgctatcacacgctcgac
gcctacgtcgccatcgtcacactgtcgatacgccgcgtcagcgacgacaagccgcccgcg
gtgcgcatcaatctctacatccggctgttgggcgtgatcaccgctggcctggtgcacgac
ctcgaaaccagacggaacgacttcaagtgcatgccctaccagcggctgttgacggcggtt
tttgtccaaatgaccgatcccgatccgctgcacgtcgactcgaccgtccagcagcagttg
atctcgtccttttgcaacaccatgcacatgattcgacccgaagaagcgccgctgttcgtg
ctcgcctggttggaaattgtcagccaccgggtggtattgggccgtctgctcggttcgtcg
acgcccgattcgaagtgttgggaaatgtacgcgacgttgttgttggatttgttccgcttt
ttggcgccatttttgcgcaatttgatcttcgacaaggccatctcgaccgtctaccgtagt
ctgatgcgtttgctgttggttctgttgcacgattttcccgaactgttgtgcgactaccat
tttcccatctgcgacatcataccggccaattgtgtccaattgcgcaatttgatcatatcc
gcatatccgaggtctatacgtctgcccgacccctacctgccaatacctcagttggaattg
ttgcccgaaatgagcgtcagtcctcgaatcacggtcaatttggacgaccaaatgcagtcc
tattcgttcaaagccgaactggacgcgtatttgaaaaatcgcgcaccggtcggctttttg
tccggtttgaggggcaaattgcaagtgtcgaacgacgccggttccaaatacaacgtgtcg
atggtcaacacgctggtcttgtacgtcggcgtccaggcgatccaggcgatcgcgcgcaac
gaccaacgccccaacgtcagtacggttgcccacaccgcccacatggatatattccaaaat
ttggccgtcgatttggacaacgagggtcgatatttgtttttcaacgccatcgccaaccaa
ctccgctatcccaacatgcatacgttgtacttcagttcggcgttgatgtatttgtttttg
gaagcgaacaccgaaactatacaagaacaaatcactagggtgcttttcgaacggctggcc
gccttgagaccccacccgtggggattgttgatgacatttacggaaattattcaaaatccc
gtgtacaaattttggtcgcacaattttgtccgctgttcgccggaagtggaaaaattgatg
gaagatgttgcccgttccggtatgggtcgacatgcttacaacaaagcatgtccttaccga
cagcatgatgcaatttgttcagaatggacaagagaacgaccagttgacaagaatttgaac
aaaaaatcaatggaaaatccgaacgaaaataatcgtattatcagatcagactga

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (55)   
   KEGG ORTHOLOGY (1)   
   RefGene (51)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (66)   

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