KEGG   Trichinella spiralis: Tsp_07593
Entry
Tsp_07593         CDS       T01609                                 
Name
(RefSeq) putative Ku70/Ku80 beta-barrel domain protein
  KO
K10885  ATP-dependent DNA helicase 2 subunit 2
Organism
tsp  Trichinella spiralis
Pathway
tsp03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:tsp00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    Tsp_07593
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:tsp03400]
    Tsp_07593
DNA repair and recombination proteins [BR:tsp03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    DNA-PK complex
     Tsp_07593
SSDB
Motif
Pfam: Ku NDUF_B6 Ku_N Ku_PK_bind Ku_C MiaE_2
Other DBs
NCBI-GeneID: 10903496
NCBI-ProteinID: XP_003381055
Position
Unknown
AA seq 887 aa
MDKGKKPTGSSDEVLNTPADTATAGKPLKIVSSSSGHGPKKSYGPWELSFTDAPNPFFYR
PPESSSDAPSHIPSNPMNLELHMKDERSRVVGLTPEEIEWRKKWVLDQKLHPDEPVYVES
AVMHLNPIRRLYRYPWDSLERKVLIPALGLKKGHFVRIVVPKFFIGMLATLCIYYHVKYN
KPNWMNRIRSYHHFPRSFIRNQDLIERDYPGLLDKAFPIPKEPKDFYDLNFSRRVTHLDV
GPPTLEYIPAVCTDDKKKAIMKEAVAICVDIGPGMRERTVAKGRCLLGTVLRCVQWIVQR
RIFSESKDELALILYNTADSKNPLSDIDKNKYILKVLQVCIHCIDEKTLNEKFQQKSIVL
FSSFDANIIINKDDMDNVTKAIKQHQLELAFISCNNDLCASNVEEDNYPKAWKYAKEFIT
AVDGIYCNLNDALNMLGSFQRRSIRSVPWKCNLEFGTILQIPICMYLKCKCYKLNQSWKW
AFAENPYVDVKLERAYVRSWDDEDELLLLSNEEIISSTASKIWSGVEVDSSYLVKAFRFG
SSVVPLNKFDLNEAKYKDREKCFKVLGFFDRCMVKQWHFAGDGTHFVFGDPKSATACQAF
SALIHSCKSNSKVILVRYAYNVASNPKIGVLIPLLKDTYECFVFVILPFEEDLIIVDQKS
IGEFEKCHVTDEQLEAVDKLIDAMNMTDLSSSASSSGDGIFKWSKVKNPYYQNLFRCMTF
RALQPKEKLPFLRDDLLEDVQPNVALLDNAKNAFDLMRKNFILEKVENAKGKRTAAEVFK
NELCDAFPAKVASFHAIDEKIVTMKIGTVNPQSLPDLYNTILRQAKCELFPFFAHTDSLG
LITVDECQSSSISQEDAVSFYSEEVSDEIMKNNPQLPDSTDLIDELE
NT seq 2664 nt   +upstreamnt  +downstreamnt
atggacaagggaaagaaaccaactggtagtagcgatgaagttttgaatactcctgctgac
acggcaacagccggcaaaccattgaaaattgtcagctctagtagtggtcacggacccaag
aaaagctacggaccgtgggaattgtcttttacagatgcaccgaatccgttcttctatcgt
cctccggaaagttcatccgatgcaccgtcgcacatcccgtcaaatcctatgaatttggaa
ttgcatatgaaagatgaacggagcagagttgttggtctgacaccagaagaaattgaatgg
cgtaaaaagtgggttctggatcagaaattgcatccagacgagccagtgtatgttgaaagc
gctgtgatgcatttgaatccaattcgtcgtttgtatcgttatccgtgggattcattggaa
cgaaaagttttgataccggcattaggtttgaagaagggtcattttgttcgcattgtagtg
ccgaaattttttatcggaatgctggcgactctttgcatttattatcacgtaaaatacaat
aagcctaactggatgaatagaatacgttcttatcatcattttccacgaagctttattcgt
aatcaagatttaattgaacgcgactatcctggattattggacaaagcatttccaattcca
aaagaacctaaagatttctatgatttaaatttcagtcgacgtgtaacgcatcttgatgtt
ggtcctccaactcttgaatatattcccgcagtttgtactgacgataagaaaaaagcgatt
atgaaagaagctgttgcaatttgtgttgatattgggcctggaatgagggaacgtactgtt
gcaaagggacgctgtcttcttggaaccgttttacgatgtgttcagtggattgtccaaagg
cggatattttctgaatcgaaagacgaactggcgttaattttgtacaatactgccgactcg
aaaaatcctcttagtgacattgacaagaataaatacattttgaaagtattgcaagtttgc
attcattgtattgatgaaaaaacgttaaatgaaaaatttcaacaaaagtcgattgtttta
ttttcaagttttgatgcaaatatcatcatcaacaaagatgacatggataatgttacgaaa
gcgatcaaacagcaccaattggagctggcatttatatcatgcaacaatgatttatgtgcc
agtaatgtggaagaagataattatccaaaggcgtggaaatatgcgaaagaatttatcact
gctgtggatggaatttattgcaatttgaacgatgctttgaatatgctcggctcttttcaa
agacgttccattagaagtgttccttggaagtgtaatcttgaatttggtacaatattgcaa
ataccgatttgcatgtatttgaagtgcaaatgttacaaacttaatcaaagttggaaatgg
gcatttgctgaaaatccttatgtcgatgtgaaattggaacgtgcttatgtaagatcatgg
gatgacgaagatgaattattattattatcgaatgaagaaattatttcttcgaccgcttcg
aaaatttggtctggcgttgaagtggattcaagttatcttgttaaagcatttcgttttggt
agttcagtagtgcctcttaataaatttgacttgaatgaagcgaaatataaagatcgtgaa
aagtgtttcaaagttttgggctttttcgatcgctgcatggtaaagcagtggcattttgct
ggagatggtacgcattttgtttttggagatccgaaaagtgccacagcttgtcaagcattt
tcagctttgatacattcttgcaaatccaattccaaagttatacttgtacgttatgcatac
aatgtggcgtcgaatccgaaaattggtgtcttgattccccttttaaaggatacctatgaa
tgctttgtatttgtaattcttccatttgaagaagatttgattattgtcgatcaaaagtca
ataggcgaatttgaaaaatgccacgtcactgatgaacaactcgaagctgttgacaagctt
atcgatgccatgaatatgactgatttatcatcatcagctagtagtagtggtgatggaatt
ttcaaatggtcaaaagtgaaaaatccttattatcagaatttatttcgatgtatgactttt
cgtgctttacaaccgaaagaaaaattaccatttttgagagatgatttattggaagatgta
caaccaaacgtagcgttgttggataatgctaagaatgcatttgatctgatgagaaagaat
ttcattttggaaaaagttgaaaatgccaaagggaaacgtacagcagcggaagtgttcaaa
aacgagctttgtgacgcatttccagcaaaagttgcttcttttcatgcaattgatgagaaa
attgttacaatgaaaattggcactgtaaaccctcaatctttgcctgatttgtacaataca
attttgagacaggcgaaatgtgaactctttcctttttttgctcatacagattctcttggt
ttgataactgttgatgaatgccagagcagtagcatttcacaagaagatgctgtgagcttt
tattctgaagaagtatctgatgaaattatgaaaaataatccacaacttccggattcaacc
gatttgatagatgaattggaataa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (43)   
   KEGG ORTHOLOGY (1)   
   RefGene (39)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (55)   

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