KEGG   Trichinella spiralis: Tsp_11234
Entry
Tsp_11234         CDS       T01609                                 
Name
(RefSeq) ATP-dependent RNA helicase DHH1
  KO
K12614  ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
Organism
tsp  Trichinella spiralis
Pathway
tsp03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tsp00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Tsp_11234
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tsp03019]
    Tsp_11234
   03036 Chromosome and associated proteins [BR:tsp03036]
    Tsp_11234
Enzymes [BR:tsp01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     Tsp_11234
Messenger RNA biogenesis [BR:tsp03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     Tsp_11234
  mRNA degradation factors
   5'-3' decay
    Decapping complex
     Tsp_11234
Chromosome and associated proteins [BR:tsp03036]
 Eukaryotic type
  Gene silencing
   piRNA pathway
    Tsp_11234
SSDB
Motif
Pfam: DEAD Helicase_C ResIII CMS1 EVA_Class_A
Other DBs
NCBI-GeneID: 10897429
NCBI-ProteinID: XP_003369945
Position
Unknown
AA seq 456 aa
MSNSEMIIDVQKRLEQFGLMKLDRPDRLSDKLMEKNCMDQNHTAEDWKKSLKLPPKDKRI
QTADVTRTKGNEFEDFCLKRELLMGLYEKGWEKPSPVQEASIPVALSGQDILARAKNGTG
KTGAYSIPLLERIDPELHSIQALIIVPTRELAMQTSQICIELSKHLKIKVMVTTGGTSLK
DDIVNLSGTVHLIIATPGRILDLMDKNIANVNKCKMLVLDEADKLLSQDFKGILDKMISF
LPEDRQIMLYSATFPITVEAFMKKHMRTPYEINLMDELTLLGVTQYYAYVQEKQKVHCLN
TLFRKLQINQSIIFCNSTQRVELLAKKITELGYSCYYIHSRMAQAHRNRVFHDFRMGYCR
NLVCSDLLTRGIDIQAVNVVVNFDFPRNAETYLHRIGRSGRFGHLGIAINLITYEDRMTL
ARIERELSTTINPIPKLVDPKLYVADYQIQDDEAQN
NT seq 1371 nt   +upstreamnt  +downstreamnt
atgtctaactctgaaatgataattgacgtccaaaagcgacttgaacagtttggcttgatg
aaattagataggccagacagattatctgataagttgatggaaaagaattgtatggaccaa
aatcataccgcagaagattggaagaaatcactgaaattgcctccgaaagataagcgaatt
cagactgcggatgtaactcgaacaaaggggaacgaatttgaagatttttgtctcaaacgc
gaattattaatgggtttgtatgaaaagggctgggaaaagccaagcccagttcaagaagct
agtataccggtagccttaagcggtcaggatattttggctagagcgaaaaatggcacagga
aaaactggtgcttatagtattccacttcttgaacgtattgatccggaactgcattcaata
caagctttgattattgttccaactcgagaattggcaatgcaaactagccagatttgcatt
gaattatcaaagcatttgaaaattaaagtgatggtgactactggtggcacaagcttgaaa
gatgatattgtaaatctttctggtactgttcatttgatcattgcaacacctggaagaata
ttggatttgatggataagaatatagcaaatgtgaacaaatgcaaaatgctcgttttggat
gaagcggacaaattattatctcaagatttcaaaggtattttggacaaaatgatcagcttt
ttgccagaagaccgacagataatgctttattcagctactttcccgataaccgttgaagct
ttcatgaagaaacatatgaggacgccgtatgaaataaacttgatggacgaattgacatta
cttggtgtgacgcagtactacgcatacgttcaggaaaagcagaaagttcattgcttgaac
acattgttccggaaattgcaaattaatcagtccattattttctgcaattcaactcaacga
gttgagttgttggcaaagaaaattaccgaactgggctactcgtgttactacatccactcc
agaatggcgcaagcgcatcgtaatcgtgttttccatgatttccgcatgggatactgtcga
aatttggtttgctcagatttgctgacccgtggtatagacattcaggcggtgaatgtagtg
gtgaattttgattttccacgtaatgctgaaacttatttgcatcgcattggacgttctgga
cgatttggtcatttgggcattgcaattaatcttatcacttatgaagatcgtatgacactt
gctagaattgagagagaattgagtacaactattaatcctattcctaagttggttgatcca
aaattatatgtggcagattaccagatacaagatgatgaggcgcagaattga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (25)   
   KEGG ORTHOLOGY (1)   
   RefGene (21)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (38)   

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