KEGG   Thermus thermophilus HB27: TT_C1461
Entry
TT_C1461          CDS       T00170                                 
Name
(GenBank) DNA-directed RNA polymerase beta chain
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
tth  Thermus thermophilus HB27
Pathway
tth03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:tth00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    TT_C1461
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tth03021]
    TT_C1461
   03400 DNA repair and recombination proteins [BR:tth03400]
    TT_C1461
Enzymes [BR:tth01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     TT_C1461
Transcription machinery [BR:tth03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     TT_C1461
DNA repair and recombination proteins [BR:tth03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      TT_C1461
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_45 RNA_pol_Rpb2_2
Other DBs
NCBI-ProteinID: AAS81803
UniProt: Q72HM5
Position
complement(1382492..1385851)
AA seq 1119 aa
MEIKRFGRIREVIPLPPLTEIQVESYRRALQADVPPEKRENVGIQAAFRETFPIEEEDKG
KGGLVLDFLEYRLGEPPFPQDECREKDLTYQAPLYARLQLIHKDTGLIKEDEVFLGHIPL
MTEDGSFIINGADRVIVSQIHRSPGVYFTPDPARPGRYIASIIPLPKRGPWIDLEVEPNG
VVSMKVNKRKFPLVLLLRVLGYDQETLARELGAYGELVQGLMDESVFAMRPEEALIRLFT
LLRPGDPPKRDKAVAYVYGLIADPRRYDLGEAGRYKAEEKLGIRLSGRTLARFEDGEFKD
EVFLPTLRYLFALTAGVPGHEVDDIDHLGNRRIRTVGELMTDQFRVGLARLARGVRERML
MGSEDSLTPAKLVNSRPLEAAIREFFSRSQLSQFKDETNPLSSLRHKRRISALGPGGLTR
ERAGFDVRDVHRTHYGRICPVETPEGANIGLITSLAAYARVDELGFIRTPYRRVVGGVVT
DEVVYMTATEEDRYTIAQANTPLEGNRIAAERVVARRKGEPVIVSPEEVEFMDVSPKQVF
SVNTNLIPFLEHDDANRALMGSNMQTQAVPLIRAQAPVVMTGLEERVVRDSLAALYAEED
GEVAKVDGNRIVVRYEDGRLVEYPLRRFYRSNQGTALDQRPRVVVGQRVRKGDLLADGPA
SENGFLALGQNVLVAIMPFDGYNFEDAIVISEELLKRDFYTSIHIERYEIEARDTKLGPE
RITRDIPHLSEAALRDLDEEGVVRIGAEVKPGDILVGRTSFKGESEPTPEERLLRSIFGE
KARDVKDTSLRVPPGEGGIVVRTVRLRRGDPGVELKPGVREVVRVYVAQKRKLQVGDKLA
NRHGNKGVVAKILPVEDMPHLPDGTPVDVILNPLGVPSRMNLGQILETHLGLAGYFLGQR
YISPIFDGAKEPEIKELLAQAFEVYFGKRKGEGFGVDKREVEVLRRAEKLGLVTPGKPPE
EQLKELFLQGKVVLYDGRTGEPIEGPIVVGQMFIMKLYHMVEDKMHARSTGPYSLITQQP
LGGKAQFGGQRFGEMEVWALEAYGAAHTLQEMLTLKSDDIEGRNAAYEAIIKGEDVPEPS
VPESFRVLVKELQALALDVQTLDEKDNPVDIFEGLASKR
NT seq 3360 nt   +upstreamnt  +downstreamnt
atggagatcaagcggttcggtcgcatccgagaggttatcccccttccacccctcaccgag
atccaggtggagtcctaccgcagggccctgcaggccgacgtccccccggagaagcgggag
aacgtcggcatccaggcggccttccgggagaccttccccattgaggaggaggacaagggc
aagggcggtctggtgctggacttcctggagtaccgcctgggcgagccccccttcccccag
gacgagtgccgggagaaggacctcacctaccaggcccccctctacgcccggctccagctc
atccacaaggacacgggcctcatcaaggaggacgaggtcttcctggggcacatccccctg
atgaccgaggacggctccttcatcatcaacggggccgaccgggtcatcgtctcccagatc
caccgctcccccggggtctacttcacccccgaccccgcccggcccgggcgctacatcgcc
agcatcatccccctgcccaagcggggcccctggattgacctggaggtggagccgaacggc
gtcgtctccatgaaggtcaacaagcggaagttccccctggtcctcctccttcgggtcctg
gggtacgaccaagagaccctggcccgggagcttggggcctacggggagctggtccagggc
cttatggacgagagcgtcttcgccatgcgccccgaggaggctctgatccgcctcttcacc
ctcctccgccccggggacccgcccaagcgggacaaggccgtggcctacgtctacggcctc
atcgccgaccccaggcggtacgacctgggcgaggccgggcggtacaaggcggaggagaag
ctggggatccgcctctcgggccgcaccctggcccgctttgaggacggggagttcaaggac
gaggtcttcctccccaccctccgctacctcttcgccctcaccgccggggtcccgggccac
gaggtggacgacattgaccacctgggcaaccgccgcatccgcaccgtgggggagctcatg
accgaccagttccgggtggggctcgcccgcctcgcccggggggtgcgggagcggatgctc
atgggctcggaggacagcctcaccccggccaagctggtgaacagccgccccttggaggcc
gccatccgggagttcttcagccgcagccagctttcccagttcaaggacgagaccaacccc
ctctcctccctgcgccacaagcggcggatctccgccctgggcccgggcggcctcacccgg
gagcgggcggggtttgacgtgcgcgacgtccaccgcacccactacgggcgcatctgcccc
gtggagacccccgagggcgccaacatcggcctcatcacctccttggcggcctacgcccgg
gtggacgagctgggcttcatccgcaccccctaccgccgggtggtgggcggggtggtcacc
gacgaggtggtctacatgacggccaccgaggaggaccgctacaccatcgcccaggccaac
acccccctggaggggaaccggatcgcggccgagcgggtggtggcccggaggaagggggag
cccgtgatcgtgagcccggaagaggtggagttcatggacgtctcccccaagcaggtcttc
tccgtgaacaccaacctcattcccttcctggagcacgacgacgccaaccgggccctcatg
ggctccaacatgcagacccaggccgtgcccctcatccgggcccaggcccccgtggtgatg
acgggcctcgaggagcgggtggtgcgggactccctggccgctctctacgccgaggaggac
ggggaggtggccaaggtggacggcaaccgcatcgtcgtgcgctacgaggacggccgcctg
gtggagtaccccttgcgccgcttctaccgctccaaccagggtacggccctggaccagcgc
ccccgggtggtggtggggcagcgggtgcgcaaaggggacctcctcgccgacggccccgcc
tccgagaacggcttcctggccctggggcagaacgtcctcgtggccatcatgccctttgac
gggtacaactttgaggacgccatcgtcatcagcgaggagctcctcaagcgggacttctac
acctccatccacattgagcgctacgagattgaggcccgggacaccaagcttggccccgag
cggatcacccgggacatcccccacctctccgaggccgccctaagggacctggacgaggag
ggcgtggtgcgcatcggcgccgaggtgaagcccggggacatcctcgtggggcggaccagc
ttcaagggcgagtccgagcccacccccgaggagaggctcctccgctccatcttcggcgag
aaggcccgggacgtgaaggacacctccctccgggtgccgcccggcgaaggggggatcgtg
gtccgcaccgtccggctgcggcggggcgaccccggggtggagctcaagcccggggtgcgg
gaggtggtccgggtctacgtggcccagaagcgcaagctccaggtgggggacaagctcgcc
aaccgccacgggaacaagggggtggtggccaagatcctccccgtggaggacatgccccac
ctgcccgacggcacccccgtggacgtgatcctgaaccccctgggcgtccccagccggatg
aacctggggcagatcctggagacccacctgggcctcgccggctacttcctgggccagcgc
tacatctcccccatctttgacggggccaaggagcccgagatcaaggagctcctcgcccag
gcctttgaggtctacttcggcaagcgcaagggcgagggcttcggcgtggacaagcgggag
gtggaggtcctccgccgggcggagaagctcggcctcgtgaccccgggcaagcccccggag
gagcagcttaaggagctcttcctccagggcaaggtggtcctctacgacggccgcacgggc
gagcccattgagggccccatcgtggtggggcagatgttcatcatgaagctctaccacatg
gtggaggacaagatgcacgcccgctccacggggccctactccctcatcacccagcagccc
ctgggcgggaaggcccagttcggcggccagcgcttcggggagatggaggtctgggccctc
gaggcctacggggcggcccacaccctccaggagatgctcacccttaagtccgacgacatt
gagggcaggaacgccgcctacgaggccatcatcaagggggaggacgttcccgagcccagc
gtccccgagtccttccgcgtgctggtgaaggagctccaggccttggccttggacgtgcag
accctggacgagaaggacaaccccgtggacatctttgaggggttggcctccaagcggtga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (19)   
   KEGG ORTHOLOGY (1)   
   RefGene (16)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (6)   
   Pfam (6)   
All databases (34)   

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