KEGG   Thioalkalivibrio paradoxus: THITH_01440
Entry
THITH_01440       CDS       T03590                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
tti  Thioalkalivibrio paradoxus
Pathway
tti03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tti00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    THITH_01440 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tti03021]
    THITH_01440 (rho)
   03019 Messenger RNA biogenesis [BR:tti03019]
    THITH_01440 (rho)
Transcription machinery [BR:tti03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     THITH_01440 (rho)
Messenger RNA biogenesis [BR:tti03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     THITH_01440 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N NACHT OB_RNB AAA Spore_III_AA Phostensin_N AAA_22
Other DBs
NCBI-ProteinID: AHE97161
UniProt: W0DFP6
Position
304422..305681
AA seq 419 aa
MNLTELKQKTAAELVAFAESQGIDNMSRARKQEIIFALLKAHAKTGEPIFGDGVLEILSD
GFGFLRGADSSYLAGPDDVYVSPSQIRRFGLRTGDTISGKIRPPKDNERYFALLKVSKIN
FEPPENARHKVLFENLTPLHPNQRMRMERGNGSTEDITARVIDMVAPFGKGQRGLIVSPP
KAGKTLMLQNIAQSIATNYPDSYLIVLLIDERPEEVTEMTRMVQGEVVSSTFDEPATRHV
QVAEMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALHRPKRF
FGAARNIEEGGSLTILATALVDTGSKMDEVIYEEFKGTGNMEIHLDRRIAEKRVYPAINV
NRSGTRREELLTEPDELQKLWILRKFLHGMDDLEAMEFLLGRMQSSKTNADFFDMMRRA
NT seq 1260 nt   +upstreamnt  +downstreamnt
atgaatctgaccgaactgaagcagaaaactgctgccgagctcgtggcgtttgccgagtcc
cagggcatcgacaacatgtcgcgggcacgaaaacaggagatcatctttgcgctgctgaag
gcccacgccaagaccggcgagccgatcttcggcgacggtgtattggagatcctgtccgac
ggcttcggattcctgcgcggcgcggacagctcgtaccttgcgggcccggatgacgtctac
gtctcgcccagccagatccggcgcttcggtctgcgcaccggcgataccatttcgggcaag
attcgcccaccgaaggacaatgaacgctatttcgcgctgctgaaggtctcgaagatcaat
ttcgagccgccggagaacgcgcggcacaaggtgctgttcgagaacctgacgccgctgcac
ccgaaccagcgcatgcgcatggagcgtggcaacggctccaccgaggacatcaccgcgcgc
gtgatcgacatggtcgcgccgttcgggaagggccagcgcggactgatcgtgtcgccgccg
aaggccggcaagacgctgatgctgcagaacatcgcgcaaagcatcgcgaccaactacccg
gacagttacctgatcgtgctgctgatcgacgagcggcccgaggaggtcaccgaaatgacc
cggatggtgcagggcgaggtggtgtccagcaccttcgacgaaccggccacccggcacgtg
caggtcgccgaaatggtgatcgagaaggccaagcgcctggtcgaacacaagcgcgacgtg
gtgatcctgctggattcgatcacgcgcttggcgcgcgcctacaacaccgtggtgccgagt
tcgggcaaggtgctcaccggcggcgtcgacgcgaacgcgctgcaccggcccaagcgcttc
ttcggcgccgcgcgcaacatcgaggaaggcggcagcctgaccattctcgccaccgcgctg
gtcgacaccgggtccaagatggacgaggtgatctacgaggagttcaagggcaccggcaac
atggagatccatctggatcgccgtatcgccgaaaaacgtgtgtacccggcgatcaacgtg
aaccgctccggcacccggcgcgaagaactgctgaccgagcccgacgagctgcagaagctc
tggatcctgcgcaagttcctgcacggcatggacgatctcgaggcgatggaattcctgctt
gggcgcatgcagtccagcaagaccaatgccgatttcttcgacatgatgcgccgcgcctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (18)   

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