KEGG   Thioalkalivibrio paradoxus: THITH_14325
Entry
THITH_14325       CDS       T03590                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
tti  Thioalkalivibrio paradoxus
Pathway
tti03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:tti00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    THITH_14325 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tti03021]
    THITH_14325 (rpoB)
   03400 DNA repair and recombination proteins [BR:tti03400]
    THITH_14325 (rpoB)
Enzymes [BR:tti01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     THITH_14325 (rpoB)
Transcription machinery [BR:tti03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     THITH_14325 (rpoB)
DNA repair and recombination proteins [BR:tti03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      THITH_14325 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_3 RNA_pol_Rpb2_45 RNA_pol_Rpb2_7 RNA_pol_Rpb2_2
Other DBs
NCBI-ProteinID: AHE99252
UniProt: W0DPU4
Position
complement(3102121..3106197)
AA seq 1358 aa
MALSYTEKKRIRKDFGKRPQILDVPYLLETQLASYRDFLQDSLPAESREAKGLHAAFQSV
FPIVSYSGHVQLEYVSYRLGEPMFDVKECQIRGVTYAAPLRVMLRLVIHDKEAPAGSTVV
KEVKEQEVYMGELPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSQKLLFNA
RIIPYRGSWLDFEFDAKDMVFVRIDRRRKLPATVLLRALAMDTEQVLQTFFEFNTVQLQE
AGAALELIPERLRGENAVVDIRDGDRMIVEAGRRITPRHIREIEKAGIRTLNVPDDYLVG
RVLARNIVDTETGEVVADANEVITEGLLDKLRDEGVGQFEIIYTNDYDRGSFISDTLRLD
STRTQLEAQVEIYRVMRPGEPPTKDAAENLFGNLFFSEERYDLSAVGRMKFNRRVGRDTD
EGAGVLSPDDILDVLKVLIDLRNGIGTTDDIDHLGNRRIRSVGEMAENQFRLGLVRVERA
VKERLTVAESEGLMPQELINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALG
PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAVYARTNRYGFLETPYRKV
EGGQVTDEIVYLSAIEESQYVIAQANAAMDDQGRLTDDLVSCRYQNEFTISTPDKIQFMD
VSPKQIVSVAAALVPFLEHDDANRALMGSNMQRQAVPCLRAEKPLVGTGIERTVAIDSGS
SIVARRGGTVDSVDAARIVVRVNDDETAAGEPGVDIYNLTKYARSNQNTCINQRPLVSVG
DELARGDVLADGSSTDMGELALGQNMMVAFMPWNGYNFEDSILISERVVQEDRFTTIHIE
ELNCVARDTKLGQEEITADIPNVSESLLAKLDESGIVYVGAEVRPGDILVGKVTPKGETQ
LTPEEKLLRAIFGEKASDVKDTSLRVPSGIEGTVIDVRVFTRDGVEKDARARSIEESDLA
GVRKDLRDQQRIYEEDIYARVERLLLNKVAAGGPDGLVDGTKVTKKYLAGLSRNHWFEIR
LRDDEGNAQLEELGRQLEEQAEAFEKRFEHQKAKLAAGDDLPPGVQKMVKVYVAVKRRMQ
PGDKMAGRHGNKGVISMIVPEEDMPFLEDGTPVDIVLNPLGVPSRMNVGQVLEVHLGWAA
KGLGQKIARMLEAQAELARLREFLAEIYARGERKVDLDTLSDTEILTLCRNLRGGVPMAT
PVFDGAHEDEIKAMLRLADLPETGQAVLYDGRTGDAFDRPVTVGYMHMLKLNHLVDDKMH
ARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKADDVQGRNKM
YKNIVDGEHYMEANVPESFNVLMKEIRALGINIELEQD
NT seq 4077 nt   +upstreamnt  +downstreamnt
atggccctcagttataccgaaaagaaacgcatccgcaaggattttggcaagcgcccccaa
atccttgatgttccctacctgctcgagacccagctcgcgtcgtatcgcgacttcctgcag
gacagcctcccggccgagagtcgcgaggcgaaggggctgcatgccgcgtttcagtcggta
ttcccgatcgtcagctattccggtcacgtgcagctggaatacgtgagctaccgcctcggg
gagccgatgttcgacgtcaaggaatgccagatccgcggcgtaacctatgccgcgccgctg
cgtgtgatgctgcggctggtgatccacgacaaggaggcgccggccggaagcacggtggtc
aaggaagtgaaggagcaggaggtctacatgggcgaactgcctctgatgaccgagaatggc
accttcgtgatcaacggcaccgagcgggtcatcgtgtcgcagttgcatcgctcgcccggc
gtgtttttcgaccacgacaagggcaagacccacagttcgcagaagctgctgttcaatgcc
cggatcatcccgtaccgggggtcgtggctggatttcgagttcgacgcgaaggacatggtg
ttcgtgcgtatcgaccggcgccgaaagctgcccgcgacggtgctgctgcgcgcgctggcg
atggacaccgagcaggtgctgcagaccttcttcgagttcaataccgttcagctgcaggaa
gcaggggcagcgctggaactgattccggaacgcctgcgtggcgagaacgcggtggtcgat
atccgcgacggcgatcgcatgatcgtcgaggcgggtcggcgcatcacgccgcggcacatt
cgcgagatcgagaaggccgggatccgcacgctgaacgtgcccgacgactatctggtcggg
cgtgtgctggcgcggaacatcgtcgacacggaaaccggcgaagtcgtcgccgatgccaac
gaggtgatcaccgagggtctgctggacaagctgcgtgacgaaggcgtcggccagttcgag
atcatctacaccaacgattacgaccgcggatcgttcatctccgacacgctgcggctggat
tccacccgtactcagctcgaggcccaggtggagatctaccgggtgatgcgcccgggcgaa
ccgccgaccaaggacgcggccgagaacctgttcggcaacctcttcttttccgaggagcgc
tacgacctgtccgcggtcggccggatgaaattcaatcgtcgggtgggccgcgacaccgac
gagggcgcgggcgtgctttcgcccgacgatatcctcgacgtgctgaaggtgctgatcgac
ctgcgcaacgggatcggcaccaccgacgacatcgaccatctcggcaatcgccgcatccgc
agcgtcggcgaaatggccgagaaccagttccggctcgggctggttcgggtcgagcgcgcg
gtgaaggagcgtctgaccgtcgccgagagcgaggggctgatgccgcaggagctgatcaac
gcgaagccggtggcggccgcggtcaaggagttcttcggctcctcgcagctgtcgcagttc
atggaccagaacaaccccttgtccgaggtgacgcacaagcgccggatctcggcgctgggc
cccggcggcctgacccgcgagcgggccggattcgaggtgcgcgacgtgcatccgacgcat
tacggccgcgtgtgcccgatcgagacgccggaaggtccgaacatcggtctgatcaattcg
ctggccgtgtacgcgcgcacgaaccgctacggcttcctcgaaaccccgtaccgcaaggtc
gagggcgggcaggtcaccgacgaaatcgtctacctgtcggcgatcgaggaaagccagtac
gtgatcgcgcaggcgaacgccgcgatggacgatcagggccgtctgaccgacgatctggtg
tcgtgccggtatcagaacgagttcacgatctcgacgcccgacaagatccagttcatggac
gtgtcgccgaagcagatcgtgtcggtggcagccgcactggtgccgttcctcgagcacgac
gacgcgaaccgcgcgctgatgggctcgaacatgcagcgccaggccgtgccctgcctgcgc
gccgagaagccgctggtcgggaccggcatcgagcggaccgtcgcaatcgattccggatcc
tcgatcgtggcccgtcgcggcggcacagtggattcggtcgacgcggcgcggatcgtggtg
cgcgtgaacgacgacgagaccgccgccggcgaacccggggtcgacatctacaacctgacc
aagtacgcccgttccaaccagaacacctgcatcaaccagcgcccgctggtgagcgtgggc
gacgagctcgcgcgtggcgatgtgctcgccgacgggtcctcgaccgacatgggcgagctg
gcgctgggccagaacatgatggtcgcgttcatgccctggaacggctacaacttcgaggac
tcgatcctgatctcggagcgggtggtgcaggaggaccggttcacgaccatccacatcgag
gagctgaactgtgtcgcgcgcgacaccaagctcggccaggaagagatcaccgcggacatc
ccgaacgtgtccgagtcgctgctcgcgaagctcgatgaatccggcatcgtctatgtcggt
gccgaggtgcgcccgggcgacatcctggtcggcaaggtcaccccgaagggcgagacccag
ctgacgccggaagagaagctgctgcgcgcgatcttcggcgagaaggcgtccgacgtgaag
gatacctcgctgcgcgtgccctccggcatcgagggaacggtgatcgacgtgcgcgtgttc
acccgcgacggcgtcgagaaggacgcgcgtgcgcggtcgatcgaggaatcggatctggcg
ggcgtgcgcaaggatctgcgcgatcagcagcgcatctacgaggaagatatctacgcccgc
gtggaacggttgctgctgaacaaggtggcggccggtggcccggacgggctcgtcgatggc
accaaggtcaccaagaaatacttggccgggctgtcgcgcaaccactggttcgagatccgc
ctgcgcgacgacgagggcaacgcgcagctcgaggaactcgggcgccagctcgaagagcag
gcggaggcgttcgaaaagcgcttcgagcaccagaaggccaagctggccgccggcgacgac
ctgcctccgggcgtgcagaagatggtgaaggtctacgtcgcggtgaagcggcgcatgcag
ccgggcgacaagatggccggccggcacggcaacaagggcgtgatctcgatgatcgttccc
gaagaggacatgccgttcctcgaagacggaacgccggtggacatcgtgctgaacccgctg
ggcgtgccgtcgcgcatgaatgtcgggcaggtgctggaagtgcacctcggctgggcggcc
aaggggctgggccagaagatcgcccggatgctcgaagcgcaggccgagctcgcgcgtttg
cgcgagtttctcgccgagatttacgcccgcggcgagcgcaaggtggatctggatacgctt
tccgataccgaaatcctgacgctctgccgcaatctgcgtggcggtgtgccgatggcgacg
ccggtgttcgacggcgcgcacgaggacgagatcaaggcgatgctgcgcctggccgacctg
cccgagaccggccaggcggtgctgtacgacgggcggaccggcgatgccttcgaccgtccg
gtgaccgtcggctacatgcacatgctgaagctcaaccacctggtcgacgacaagatgcac
gcgcgttccaccggaccgtactcgctggtcacccagcagccgctgggcggcaaggcccag
ttcggcggccagcgcttcggcgagatggaggtctgggcgctcgaggcctacggcgccgct
tacaccttgcaggagatgctgaccgtgaaggcggacgatgtgcagggtcgcaacaagatg
tacaagaacatcgtcgacggcgaacactacatggaggcgaatgtgccggagtccttcaac
gtgctgatgaaggagatccgcgcgctcggcatcaacatcgagctggaacaggactga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (17)   

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