KEGG   Thermobaculum terrenum: Tter_1920
Entry
Tter_1920         CDS       T01134                                 
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
ttr  Thermobaculum terrenum
Pathway
ttr03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ttr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Tter_1920
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ttr03019]
    Tter_1920
   03400 DNA repair and recombination proteins [BR:ttr03400]
    Tter_1920
Enzymes [BR:ttr01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Tter_1920
Messenger RNA biogenesis [BR:ttr03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     Tter_1920
DNA repair and recombination proteins [BR:ttr03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      Tter_1920
SSDB
Motif
Pfam: Helicase_C DEAD RecQ_Zn_bind ResIII AAA_30 TrmB HTH_IclR DUF3553 HTH_9 PcrA_UvrD_tudor HTH_46 HTH_CodY MSSS
Other DBs
NCBI-ProteinID: ACZ42826
UniProt: D1CGF5
Position
2:complement(40013..41704)
AA seq 563 aa
MSAEHPQLEDLLEKFGHQEFKDGQREALRALLSGRDVIAILPTGAGKSLIYQLASQLLPG
VTLVVTPLLALMSDQLEAMEEVGVKAVGFSSLYPETREALEGIKRGEIKLVYVTPEGATG
GNLREELDDRPVSLFVVDEAHCISEWGYDFRPSYLQLGEVVEEVGRPPVLALTATATPWV
RQDIARTLGMRDPLVVAHGFDRPNLFLQVHRLEQHEDERQVLEALLSGQVEAYTEEVSAR
IRRALEGPGLIYTNTTRAAEETAGWLKEMGIPAGYYHGRRRKSERERVQQDFMEGKLRVV
VATNAFGMGIDKPDVRFVIHRDAPASLEAYYQEAGRAGRDGEFAFCCLLHKDEDLEKAAF
MAGSSDLTLDEVRQVYQALRKIRRRELEDIQEETGLGRSLIVRALMALERSGFIRQEEDR
ILLTRKRFDPQQVSLEEEHARREYERSRLEMMRSYMESPGCRREFILNYFGEQMRGERCN
MCDNDLLGRRPRASRVDHPFEVGQRVRHPSLGDGTVHRIEGDKITVLFASKGYRELSLEH
IVREGLLAPLSQDDRQPSGLERR
NT seq 1692 nt   +upstreamnt  +downstreamnt
atgtccgcagaacacccccaacttgaggatctactggagaagttcggccatcaggagttc
aaggacggccaacgagaggctctcagagcgctgttgtccggaagggacgtcatagccatc
ctgcccacgggcgccggcaagtcgctgatctaccagctggcatcgcagctgctgccgggg
gtgacgctggtggtcacccccctgctggcgctgatgagcgaccagctagaggccatggag
gaggtgggcgtgaaggccgtgggcttcagcagcctctatcccgagacccgcgaggcgctg
gagggcatcaagcgcggggagatcaagctggtgtacgtcaccccagagggggccacgggc
ggcaacctccgggaggagctggacgacaggccggtctcgctcttcgtggtggacgaggcc
cactgcatctcggagtgggggtacgacttccgcccctcctacctgcagctgggggaggtg
gtcgaggaggtggggcgtccgccggtgctggcgctcacggccaccgccaccccgtgggtg
aggcaggacatcgcccggacgctggggatgcgcgatccgttggtggtggcccacggcttc
gaccgccccaacctgttcctgcaggtgcaccggctggagcagcacgaggacgagcggcag
gtgctggaggcgctgctctccggccaggtggaagcctacaccgaggaggtgagcgcgcgc
atcaggagggcgctggagggcccggggctgatctacacgaacaccaccagggccgccgag
gagacggccgggtggctcaaggagatgggcatccccgcgggctactaccacggcaggcgc
cgcaagagcgagagggagcgtgtgcagcaggatttcatggagggcaagctcagggtggtg
gtcgcgaccaacgccttcgggatggggatagacaagcccgacgtgcgcttcgtgatccac
cgcgacgcgcccgccagcctggaggcctactaccaggaggccggccgggcgggcagggat
ggcgagttcgcgttctgctgcctgctgcacaaggacgaggaccttgagaaggcggcgttc
atggcgggctcaagcgacctgactctggatgaggtgaggcaggtgtaccaagcgctgcgc
aagatcaggcggcgggagctggaggacatccaggaagagacgggcctgggaaggagcctg
atcgtgagggcgctgatggcgctggagcgcagcggcttcatccggcaggaggaagaccgg
atacttctcacgcggaaacgcttcgatccccagcaggtgtcgctggaggaggagcacgcc
cgcagggagtacgagcgcagccggctggagatgatgcgctcctatatggagtcgcccggc
tgtcgaagagaattcatcctcaactacttcggggagcagatgcggggcgagcgctgcaat
atgtgcgacaacgacctgctgggcaggcggccgcgggcctcgcgcgtggaccacccgttc
gaggtcggccagagggtgaggcacccctccctgggtgacggcacggtccacaggatagag
ggcgacaagatcaccgtgctgttcgcgagcaaggggtaccgagagctctccctggagcac
atcgtgcgggagggcctgctggcgcccctaagccaggatgatcgtcagcccagcggcctc
gaaaggcgctag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (14)   
   KEGG ORTHOLOGY (1)   
   RefGene (11)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (13)   
   Pfam (13)   
All databases (35)   

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