KEGG   Tupaia chinensis (Chinese tree shrew): 102472604
Entry
102472604         CDS       T02978                                 
Symbol
EDC4
Name
(RefSeq) enhancer of mRNA decapping 4
  KO
K12616  enhancer of mRNA-decapping protein 4
Organism
tup  Tupaia chinensis (Chinese tree shrew)
Pathway
tup03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tup00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    102472604 (EDC4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tup03019]
    102472604 (EDC4)
Messenger RNA biogenesis [BR:tup03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     102472604 (EDC4)
  mRNA degradation factors
   5'-3' decay
    Decapping complex
     102472604 (EDC4)
SSDB
Motif
Pfam: Ge1_WD40 EDC4_C WD40
Other DBs
NCBI-GeneID: 102472604
NCBI-ProteinID: XP_006156940
Position
Un
AA seq 1405 aa
MASCASIDIEDATQHLRDILKLDRPAGGPSPESQRPSNAYNGDLNGLLGPDPLCAGDGTS
ANKPSLRTMPPINLQEKQVICLSGDDSSTCIGILAKEVEIVASSDSSISSKARGSNKVKI
QPVAKYDWEQKYYYGNLIAVSNSFLAYAIRAANNGSAMVRVISVSTSERTLLKGFTGSVA
DLAFAHLNSPQLACLDEAGNLFVWRLALVNGKIQEEILVHIRQPEGTPLNHFRRIIWCPF
IPEESEDCCEESSPTVALLHEDRAEVWDLDMLRSNHSTWPVDVSQIKQGFIVVKGHSTCL
SEGALSPDGTVLATASHDGYVKFWQIYIEGQDEPRCLHEWKPHDGRPLSCLLFCDNHKKQ
DPEVPFWRFLITGADQNRELKMWCTVSWTCLQTIRFSPDIFSSVSVPPSLKVCLDLSAEY
LILSDVQRKVLYVMELLQNQEEGRACFSSISEFLLTHPVLSFGIQVVSRCRLRHTEVLPA
EEENDSLGADGSHGAGAMESAAGVLIKLFCVHTKALQDVQIRFQPQLNPDVVAPLPTHTA
HEDFAFGESRPELGSEGLGSATPSSQPDLRRIVELPAPADFLNLSSETKPKLMTPDAFMT
PSASLQQITASPSSSSNSSSSSSSSSSSSSSLTAVSAMSSTSVVDPSLARPPEELTLSPK
LQLDSGLTMSSSSSSLQASPRSLIPGLLQGPADKLAPKGPGQVPTAASALSLELQEVEPL
GLPQASPSRTRSPDVISSASTALSQDIPEIASEALSRGFGSSVPEGLEPDSMASAASALH
LLSPRPRPGPELGSQLGLDGGPGDGDRHSTPSLLEAALTQEATTTDSQVWPTAPDITRET
CSTLAESPRNGLQEKHKSLAFHRPPYHLLQQHDSQDASAEQSDHDDEVASLASASGGFGT
KVPTPRLPSKDWKTKGSPRTSPKLKRKNKKDDGDSAMGPRLTEHQQVAEPPEDWPALIWQ
QQRELAELWHSQEELLQRLCTQFEGLQSTVTGHVERALETRHEQDQRRLERALAEGQQRG
GQLQEQLTQQLSQALSSAVAGRLERSIRDEIKKTVPPCVSRSLEPVAGQLSNSVATKLTA
VEGSMKENISKLLKSKNLTDAIARAAADTLQGPMQAAYREAFQSVVLPAFEKSCQAMFQQ
INDSFRLGTQEYLQQLESHMKSRKAREQEAREPVLAQLRGLVNTLQGATEQMAATVSSSV
RAEVQHQLHVAVGSLQESILAQVQRIVKGEVSVALKEQQAAVTSSIMQAMRSAAGTPVPS
AHLDCQAQQAHILQLLQQGHLNQAFQQALTATDLNLVLYVCETVDPAQVFGQPPCPLSQP
VLLSLIQQLASDLGTRTDLKLSYLEEAVMHLDHSDPITRDHMGSVMAQVRQKLFQFLQAE
PHNSLGKAARRLSLMLHGLVTPSLP
NT seq 4218 nt   +upstreamnt  +downstreamnt
atggcctcctgcgcgagcatcgacatcgaggacgccacgcagcacctgcgggacatcctc
aagctggaccggcccgcggggggtcccagtccagagagccagcggccatctaatgcctac
aacggggacctcaatgggcttctgggcccagatcctctctgcgcaggtgatggtacttca
gcaaacaagcctagtcttcggaccatgccacccattaacctgcaggagaagcaggtcatc
tgcctctcaggagatgacagctctacctgcattgggattttggccaaggaggtggagatt
gtggccagcagtgactctagcatttcgagcaaggcacgaggaagcaataaggtgaaaatc
cagcctgttgccaagtacgactgggaacagaagtactactatggcaacctgattgctgtg
tctaactccttcttggcctatgccattcgggctgccaacaacggctcggcgatggtgcgg
gtcattagtgtaagcacatcagagcggaccctgctcaagggcttcacaggcagtgtggcg
gacctggcctttgcacacctcaactctccacagctggcctgcctggatgaggcaggcaac
ctgtttgtgtggcgcttggctctggttaatggcaagatacaagaagagatcttggtccat
atccggcagccagagggcacgccactgaaccacttccgcaggatcatttggtgccccttc
atccctgaggagagtgaggattgctgcgaggagagcagcccaacggtggccttgctgcat
gaggaccgggctgaggtgtgggacctggacatgcttcgctctaaccacagcacctggccc
gtggatgtcagccagatcaagcagggcttcattgtggttaaaggccacagcacgtgtctc
agtgaaggagccctttcccctgatggtactgttctggctactgcgagccatgatggctat
gtcaagttctggcagatctacattgaagggcaggatgagccaaggtgtctgcatgagtgg
aagcctcatgacgggcgacctctgtcttgcctcctgttctgtgacaaccataagaaacag
gaccctgaggtccctttctggaggtttctcattactggcgctgatcagaatcgggagctc
aagatgtggtgcacagtgtcctggacctgcctacagactattcgcttctccccagatatc
ttcagctcagtgagtgtgccccccagcctcaaggtctgcttggacctctcagcagaatac
ctgattctcagtgatgtgcagaggaaggttctctatgtgatggagctgctgcagaaccag
gaggagggtcgtgcctgcttcagctccatctcggagttcttgctcacccaccctgtgctg
agcttcggtatccaggttgtgagccgctgccggctgcggcacactgaggtgctgcctgcc
gaggaagagaatgacagccttggggctgatgggtcccatggagctggtgccatggagtct
gcagccggtgtgctcatcaagctcttttgtgtgcatactaaggcactgcaagatgtgcag
attcgcttccaaccacagttgaatcctgatgtggtggccccgctccccacccacactgcc
cacgaggactttgcattcggagagtctcggcctgaattaggctcggagggcctggggtca
gccactcccagttctcagcctgacctccgacgcatcgtggagctgcccgcacctgccgac
ttcctcaatcttagcagcgaaaccaagcccaagttaatgacacctgatgccttcatgaca
cccagcgcctccctgcagcagatcactgcatccccgagcagcagcagcaacagcagcagt
agcagcagcagcagcagtagcagcagcagctctcttacagctgtgtctgccatgagcagc
acatcggtcgtggacccctccttggccaggccacccgaggagctgaccttgagtccgaag
ctgcagctggacagtggtctgacaatgagcagcagcagcagcagcctgcaggcaagccct
cgcagcctcatccctgggctgctccaaggcccagctgataaattggctcccaaggggccc
gggcaggtacctaccgctgcctctgcactgtccctggagctgcaggaagtagagcccctg
gggctacctcaggcctccccgagccgcacccgctcccctgatgttatctcctcggcttcc
actgccctgtcccaggacattcctgagatcgcatctgaggccctatcccgtggctttggt
tcctctgttcctgagggccttgagccagacagtatggcctcagctgcctcagcgctacac
ctgctgtccccacggccccgaccagggcctgagcttggttctcagcttggcctggatgga
ggccctggggatggggatcggcatagtaccccctctctcctggaggcagccttaacccaa
gaggccacaaccactgacagtcaggtctggcccacagcacctgacattactcgtgagacc
tgtagcaccctggcggagagccctagaaatggcctccaggagaagcacaagagcttagcc
ttccaccgaccaccttatcacctgctgcagcaacatgatagccaggatgccagtgccgag
caaagtgaccacgatgatgaagtggccagccttgcctctgcctcgggaggcttcggcacc
aaagttcctactccccggctgccttccaaggactggaagaccaagggatcccctcggacc
tcacctaaactcaagaggaaaaacaagaaggacgatggggattcagccatgggaccccga
ctcacagagcaccagcaggtagcagagccccctgaggactggccagcactgatttggcaa
cagcagagagagctggcagagctgtggcatagccaagaagagctgctacagcgtctgtgt
acccagtttgaaggcctgcagagcaccgtcaccggccatgtggaacgtgccctcgagacc
cgacatgagcaggatcagcggcggctagagcgggccctggctgaggggcagcagcggggt
gggcagctgcaggagcagctgacacaacagctgtcccaggcactgtcttcagcagtggct
gggcggctagaacgcagcatacgggacgagatcaagaagacagtccctccatgcgtctcc
aggagtctggagcctgtggcaggccaactgagcaactcagtggccaccaaactcacagct
gtggagggcagcatgaaagagaacatctctaagctgctcaagtccaagaacttgacagat
gccatcgctcgagcagcggcagacacattacaggggccaatgcaggctgcctaccgtgaa
gctttccagagtgtggtgctgccagcttttgagaagagctgccaggccatgttccagcag
atcaatgatagcttccggctgggcacacaggaatacttacagcagctggaaagccacatg
aagagccggaaagctcgggaacaggaggcaagggaacctgtgctggcccagctgcggggc
ctggtcaacaccctgcagggtgccactgagcagatggcagccactgtgtccagcagtgtt
cgggctgaggtgcagcatcagctgcatgtggctgtgggcagcctgcaggagtcaatttta
gcccaggtacagcgcattgttaagggggaggtgagtgtggcgctcaaggagcagcaggct
gccgtcacctccagcatcatgcaggccatgcgttcagctgctggcacacctgtcccctct
gcccacctcgactgccaggcccagcaagctcatatcctacagctgctgcaacagggccac
ctcaatcaggcctttcagcaggcactgacagccactgacctgaacctggtgctgtatgtc
tgtgaaactgtggacccagcccaggtttttgggcaaccaccctgcccgctttcccagcct
gtgctcctgtccctcatccagcagttggcatctgaccttggcactaggactgacctcaag
ctcagctacctggaagaagctgtgatgcacctggaccacagtgaccccatcactcgggac
cacatgggctccgttatggcccaggtgcgtcagaaactcttccagttcctgcaggcagag
ccacacaactcacttggcaaagcagcccggcgactgagcctcatgctgcatggccttgtg
actcccagcctcccttag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (14)   
   KEGG ORTHOLOGY (1)   
   RefGene (10)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (6)   
   RefSeq(nuc) (2)   
   GenBank (2)   
   EMBL (2)   
Protein domain (3)   
   Pfam (3)   
All databases (29)   

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