KEGG   Tupaia chinensis (Chinese tree shrew): 102476442
Entry
102476442         CDS       T02978                                 
Symbol
SLC6A13
Name
(RefSeq) sodium- and chloride-dependent GABA transporter 2
  KO
K05045  solute carrier family 6 (neurotransmitter transporter, betaine/GABA) member 12
Organism
tup  Tupaia chinensis (Chinese tree shrew)
Pathway
tup04721  Synaptic vesicle cycle
tup04727  GABAergic synapse
Brite
KEGG Orthology (KO) [BR:tup00001]
 09150 Organismal Systems
  09156 Nervous system
   04727 GABAergic synapse
    102476442 (SLC6A13)
   04721 Synaptic vesicle cycle
    102476442 (SLC6A13)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02000 Transporters [BR:tup02000]
    102476442 (SLC6A13)
Transporters [BR:tup02000]
 Solute carrier family (SLC)
  SLC6: Sodium- and chloride-dependent neurotransmitter transporter
   102476442 (SLC6A13)
SSDB
Motif
Pfam: SNF
Other DBs
NCBI-GeneID: 102476442
NCBI-ProteinID: XP_006163312
Position
Un
AA seq 671 aa
MDGRVSGTTSNGDTNPAYPGLEKAEEDDTLERGHWNNKMEFVLSVAGEIIGLGNVWRFPY
LCYKNGGGAFFIPYLIFLFTCGIPVFLLETALGQYTSQGGVTAWRKICPIFEGIGYASQM
IVILLNVYYIIVLAWALFYLFSSFTTDLPWGSCHHEWNTGCCSLGAGLSPSAGFRCVGAQ
ADVGRVSEASLPSSPQAVLPFPQACARWRVERTRTCSPHSPPVCSAACMLSPAHLSPHTL
MLAQGSALCQRALKPGRRVLKLSAGIQQLGALRWELALCLLLAWVVCYFCIWKGVKSTGK
VVYFTATFPYLMLVVLLIRGVTLPGAAQGIQFYLYPNLTRLWDPQVWMDAGTQIFFSFAI
CLGCLTALGSYNKYHNNCYRDCIALCFLNSATSFVAGFVVFSILGFMSQEQGVPISEVAE
SGPGLAFIAFPKAVTMMPLSQLWSCLFFIMLIFLGLDSQFVCVEXAMFPSQRRKSGRREL
LILAIAVACYLMGLFLVTEGGMYIFQLFDYYASSGICLLFLSVFEVVCISWVYGADRFYD
NIEDMIGYRPWPLVKISWLFLTPGLCVATFLFSLSKYTPLRYNNVYVYPPWGYSIGWLLA
LSSMACVPLFVIVTLLQTQGSFRKRLQQLITPDSSLPQPRQHPYPDRSAGQPRGPSLTKE
GLIAGEKETHL
NT seq 2016 nt   +upstreamnt  +downstreamnt
atggacggcagggtctcaggcacaaccagtaatggagacacaaacccagcatacccaggc
ctggaaaaggcggaggaagacgacaccctggagcggggccactggaacaacaagatggag
tttgtgctgtcagtggccggggagatcatcggtttaggcaacgtctggcggtttccctat
ctctgctacaaaaacgggggaggtgccttcttcatcccctacctcatcttcctcttcacc
tgtggcattcccgtcttcctcctggagactgctctgggccagtacacgagccaggggggc
gtcacagcctggaggaagatctgccccatctttgagggcatcggctatgcctcccagatg
atcgtcatcctcctgaacgtctactacatcatcgtgctggcctgggccctcttctacctc
ttcagcagcttcaccacggaccttccctggggaagctgccaccacgagtggaacacgggg
tgctgctccttgggtgctgggctgtcaccgagcgctggcttccgctgtgtcggcgcgcag
gccgacgtggggagggtctcggaggcgagcttgcccagctctcctcaggccgtgctgccc
tttcctcaggcgtgtgcccgctggcgtgtagagcgcacacgtacatgcagtccccactca
ccacctgtgtgctcagctgcatgtatgctgtctcctgcccacctgtccccacacacactg
atgctcgcccagggctcggccctgtgtcagagagccctaaaacccgggaggcgcgtcctg
aagctctccgccggtatccagcagctgggcgccctgcgctgggagctggcgctgtgcctc
ctactggcctgggtcgtctgctacttctgcatctggaagggcgtcaagtccacgggcaag
gtggtgtacttcacagccaccttcccctacctcatgctggtggtcctgctgattcgaggg
gtgacgctgcctggggcggcccaaggaatccagttttacctgtaccccaacctcacccgg
ctgtgggatccccaggtgtggatggacgcgggcacccagatcttcttctccttcgccatc
tgcctggggtgcctgacggccctgggcagctacaacaagtaccacaacaactgctacagg
gactgcatcgccctctgcttcctgaacagtgccaccagctttgtggccggcttcgtggtc
ttctccatcctgggcttcatgtcccaagagcagggggtgcccatctctgaggtggccgag
tcaggtcctgggctggccttcatcgcgttccccaaggccgtgactatgatgcccttgtcc
cagctgtggtcctgcctcttcttcatcatgctcatattcctagggctggacagccagttc
gtctgcgtggagntggccatgttccccagccagcgccgaaagagcgggcggcgcgagctc
ctcatcctcgccatcgcggtcgcgtgctacctgatggggctcttcctggtcaccgagggc
gggatgtacatcttccagctgttcgactactatgcctccagcggcatctgcctgctcttc
ctctcggtgttcgaggtcgtctgcatcagctgggtgtacggggcggaccgtttctatgac
aacatcgaggacatgattggctaccggccgtggcccctggtgaagatctcctggctcttc
ctgacccctgggctttgtgtggccacgttcctcttctccctgagcaagtacaccccgctc
agatacaacaacgtctacgtgtacccgccctggggctactccatcggctggctgctggcc
ctctcctccatggcctgcgtccctctcttcgtcatcgtcacgctcctgcagactcagggt
tccttcaggaagcgcctgcagcagctgatcacccccgactccagcctgccccagcccagg
cagcacccctaccctgaccgcagcgccggtcagccacgcgggccttccctgacaaaggag
gggctgatagccggcgagaaggagacccatctgtag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (41)   
   KEGG ORTHOLOGY (1)   
   RefGene (37)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (49)   

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