KEGG   Tetranychus urticae (two-spotted spider mite): 107362584
Entry
107362584         CDS       T04901                                 
Name
(RefSeq) replication factor C subunit 1
  KO
K10754  replication factor C subunit 1
Organism
tut  Tetranychus urticae (two-spotted spider mite)
Pathway
tut03030  DNA replication
tut03410  Base excision repair
tut03420  Nucleotide excision repair
tut03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:tut00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    107362584
   03410 Base excision repair
    107362584
   03420 Nucleotide excision repair
    107362584
   03430 Mismatch repair
    107362584
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:tut03032]
    107362584
   03400 DNA repair and recombination proteins [BR:tut03400]
    107362584
DNA replication proteins [BR:tut03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    107362584
DNA repair and recombination proteins [BR:tut03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     107362584
SSDB
Motif
Pfam: RFC1 AAA AAA_22 Rad17 AAA_30 RuvB_N AAA_14 AAA_5 AAA_16 AAA_33 AAA_17 AAA_18 NTPase_1 nSTAND3 RNA_helicase DNA_pol3_delta TIP49 BSP_II AAA_19 AAA_assoc_2 Viral_helicase1
Other DBs
NCBI-GeneID: 107362584
NCBI-ProteinID: XP_015785166
Position
Unknown
AA seq 671 aa
MRITTHVYFYSIVCSGKVKGIFSSIDVTSLHSSKKNSSRYQYKQKQFTFNLDMDSLFVEK
YKPLASEKIIGQHGPKSNVKKLTHWLQNWESNLNKKPGFGKFAAEDGAGFRAALLSGPPG
VGKTTSATLVCKELGYTYTELNASDTRSKKSLGEEVANLLSNRTFADVRSKGNSVLSSKH
VLIMDEVDGMAGNEDRGGVAELIKLIQKTGMPIICICNDRSHPKMRSLVNYCFDLRFTRP
RIEQIKAHMLSVCFKEGIKMSGDALNELIISSNQDIRQVLHYISLLATAKKGEKVDFKSQ
KVIKDVKLGPFDALKKLFVADCSKPLSFNDRSDLFFSDYSLMPLFVHENYPVVQPIGLSK
SQSRQRLDLGVKTIQSIAFSNLIEKEIRSSNNWSLLPMQAAFSSVLPSVYMSGHLGGMIE
FPKMLGKISSGNKKDRLIQDLKMHMSLRVNSSKTTINLDYIPVLREKIYKPLRVRGTEAI
PEIVDIMNYYCIRKEDLDCMLEFLWPNEKNPVGTIDAKTKAALTRQCNASSSLLPYSTMP
GKKTKKRKAATNEDEFGEEGEGEEEEEEEEEPVIQPKKKVKKAATKESPKANGTKNGPKE
KKEKKEKDESEKPAKGAKGPAKGKKTEVNGKAPAPVTTNKGAKRAASPEKISPQGVKKER
KISDMFKRMQR
NT seq 2016 nt   +upstreamnt  +downstreamnt
atgagaatcacaactcatgtttacttttattcaattgtttgcagcgggaaggtgaaaggt
attttctcatcaatagatgtcaccagcttacattcgtcaaaaaaaaactcttcccgctac
caatacaaacaaaaacaattcacgtttaatttagatatggattctcttttcgtcgagaag
tataagcctcttgcttctgagaaaattattggtcaacatgggcctaaaagtaatgttaaa
aagctgacccattggttacagaactgggaatcgaatttgaacaaaaaacctggatttggt
aaatttgcggctgaagatggtgctggtttcagagctgctttgctttcagggcctccaggt
gttggtaaaacaacatcagctactttggtctgtaaagagcttggatatacttataccgaa
ttaaatgcttccgatactcgaagcaagaagtcactaggtgaagaagttgctaatttattg
agcaatagaacttttgctgatgtgagatccaaaggtaattccgttctctcatctaaacat
gtactcatcatggatgaggttgacggtatggctggtaacgaggaccgaggtggtgttgct
gaattgataaagcttatccagaaaacgggtatgccaattatttgtatatgtaacgacaga
tctcaccctaaaatgagaagcctcgtaaattattgttttgatttgagattcacgagacct
cgcattgaacaaatcaaagcccatatgctgtccgtttgttttaaggaagggataaaaatg
agcggtgacgctcttaacgagttaattatttcttcgaaccaagacataaggcaggttctt
cattatatttcactgctagcaactgcgaaaaaaggtgaaaaagtcgattttaaatcacaa
aaagtcataaaggatgtaaaattgggaccatttgatgctcttaaaaagctatttgttgct
gattgctctaaaccattgagttttaatgatcgttcagatttatttttctcagactattca
ctgatgcctttatttgttcatgagaattatccagttgttcaacctattggcttatcaaag
agccaatcaaggcaaagacttgatctcggagttaaaactattcaatcaattgcattttct
aatctaattgagaaagaaattcgctcatccaataattggtcgcttttacctatgcaagca
gctttctcttcggtgctcccaagtgtttacatgagtggccatttaggtggcatgatcgaa
tttcctaaaatgctcggtaaaatttcatctggtaacaagaaagatcgcctcattcaggat
ctcaaaatgcacatgagtttacgtgttaatagtagtaaaaccactatcaatttagattat
attcccgttcttagagaaaagatttataaaccgttacgcgttcgtggtaccgaagctatt
cctgagattgttgatattatgaattattattgtattcgaaaagaagatttagattgcatg
ttagaattcttatggcccaatgaaaagaacccagttggtacaattgatgctaaaacaaaa
gcagctttaactagacaatgtaatgcatcatcaagccttctaccttactcaacaatgcct
ggcaagaagactaagaagcgtaaagcagctaccaatgaggatgaatttggtgaagaagga
gaaggagaggaggaagaagaagaagaagaagaacccgttattcaaccaaaaaagaaagtt
aaaaaagctgcaaccaaagagagtccaaaagcaaatggaactaaaaatggaccaaaagag
aagaaagagaagaaagaaaaagatgaaagtgaaaagccagcgaaaggagctaaaggacca
gccaaagggaagaaaacagaagttaatggtaaagcaccagcgcctgttacgacaaataaa
ggtgctaaacgtgctgcttcacctgaaaaaataagtcctcaaggggtcaaaaaagaaaga
aaaataagcgatatgttcaagcgaatgcaaagatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (28)   
   KEGG ORTHOLOGY (1)   
   RefGene (24)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (21)   
   Pfam (21)   
All databases (63)   

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