KEGG   Tetranychus urticae (two-spotted spider mite): 107368142
Entry
107368142         CDS       T04901                                 
Name
(RefSeq) LOW QUALITY PROTEIN: 5'-3' exoribonuclease 1-like
  KO
K12618  5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
tut  Tetranychus urticae (two-spotted spider mite)
Pathway
tut03008  Ribosome biogenesis in eukaryotes
tut03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tut00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    107368142
  09123 Folding, sorting and degradation
   03018 RNA degradation
    107368142
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tut03019]
    107368142
   03009 Ribosome biogenesis [BR:tut03009]
    107368142
   03016 Transfer RNA biogenesis [BR:tut03016]
    107368142
   03036 Chromosome and associated proteins [BR:tut03036]
    107368142
Messenger RNA biogenesis [BR:tut03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     107368142
  mRNA degradation factors
   5'-3' decay
    5' exonucleases
     107368142
Ribosome biogenesis [BR:tut03009]
 Eukaryotic type
  Pre-60S particles
   RNases
    107368142
Transfer RNA biogenesis [BR:tut03016]
 Eukaryotic type
  tRNA degradation factors
   Rapid tRNA decay (RTD) pathway factors
    107368142
Chromosome and associated proteins [BR:tut03036]
 Eukaryotic type
  Gene silencing
   piRNA pathway
    107368142
SSDB
Motif
Pfam: XRN_N XRN_M XRN1_D2_D3 XRN1_D1 SH3_12
Other DBs
NCBI-GeneID: 107368142
NCBI-ProteinID: XP_015791407
Position
Unknown
AA seq 1497 aa
MGVPKFYRWMSERYPCLNQVVRESEIPEFDNLYLDMNGIIHACSHPNDEDVHFRLPEEVM
VKDIFKYIEVLFNIIKPRKIFFMAVDGVAPRAKMNQQRGRRFRSAKDAITRETEAQNKGE
VLPKEARFDSNCITPGTDFMARLQKHLEYFVASKISNDELWKNVKVILSGHETPGEGEHK
IMDFIRTQRSLPDYDANTRHCLYGLDADLIMLGMCSHEPYFALLREEVKFRRRKEKEPTF
HVNPEAINFHLLHLSLLRDYLDHEFSSLKKSLPFDYDLECIIDDWVLMGFLCGNDFIPHL
PHFHIGKNALTTLYKVYMDVLPSCNGYLNHQGKLNLQNFQKFLHKLSEIDVENFNEMNAD
FKYLESKSSRFKSPKKLVRYEECDGIIGESLESGNDDDSNLIDLGSEEASDAEEEDELSI
SEEDDTLEDEFIMHKRDYYRTKMHYDDVTPAVLKEQAYCYIKAIQWNLHYYYDGCPSWSW
YYPHHYAPYISDVKSFENIDLTFDLGQPFKPFEQLLGVLPAASKEFLPKPYQRLVTDESS
PLKDYYPEEFELDLNGKVNSWEAVVVIPFIDEEKLLNAARSCESQLSEREKRRNCHGPHL
LFTYSKDHQEPVPSTLPGFLPDIEVSHAKLVKVNKDAYNIPMNQIRKGLLPGIDPDVYTP
GFPTLRTMEHTARLEKANIRVFEMPSSGYSILVDLTPKPEVTLKSLLSDYLGKTVYINWP
FLVEAKICKICDGEKIFSYNSVGQSESRALRDKEKKEIDSQVKTIAESLKNRRGIHLPHF
DFILYCKPLTGCKYNLGSNGVVSLDKQWSPVENCVPLPMAIKDLPIRQGIINKHISSMNC
SLLDLCFILNEQYYGDLADIIEVQKKTNKVKVMIQRVAEPDLIEVKNRSYELMSKEYMTN
HALAQRLSVNPCIVSRLTGTVMVEKANGNKVNIGLNLKFNTRREYVPGYSQRRDETWLFS
WKTLKLMEEYNSKFPELFINLSRLADQKRFQPEQIFNGPNPEAKISEVAAWLKTLPYQNA
RRMKFDTEALDEVVVKCIEDVLDAHKVFANQYEPITLVYSTNQLYRPANIIGHSPPDPNA
TFNLFDRVVNVREGISVPLGARGVIIGKTKDKQDDDTYLCDIVFDESFIGGMSYNCSAGR
GYRLHPYNLINISYRKKKGSYGVREDFDMAPIQPTKIDQRDKKARQKASPGFKKLINLSP
NRNHERHDYSNRREYNDQGNQSYTHHNYSDHRNNKQVISSPIQINHSPKSLFQSPRESNS
SDFSSLWNKIRNHEDSQPEESASHMDTTASTAASLAKANMINNELVEMYKNMELKQTENL
KSLKLDDTSIDLSLIQFPVLPPPPPKWFEKDETSPIPEALVENHQIFNRVKKAQKNKLSA
SNLTNQQQQQKTNRNSNTQQLYLPFPRQIQGPRPNKFIPLQVERNKQKLDDSFAKRSSAP
HDNKTEHRKNEMAIQNRRSSKHTESAKKSVKRRESRIMVGIGSKPEAAEQENLILFE
NT seq 4494 nt   +upstreamnt  +downstreamnt
atgggtgttcctaaattttatcgttggatgtctgaaaggtatccctgcttaaaccaggtt
gtccgtgaaagtgagatacctgaatttgataatttatatttagatatgaacggtattatt
cacgcctgttcacatccaaacgacgaggatgtccactttaggcttcctgaagaggttatg
gttaaagatatttttaagtatatcgaggttcttttcaatattattaaaccacgtaaaatt
tttttcatggctgttgatggagttgcacctcgagcaaagatgaatcaacaaagaggacgt
cgtttcagatccgcaaaagatgctatcacaagagaaacagaagcacaaaataaaggagaa
gtattgcctaaagaagcacgatttgattcaaattgtatcacaccaggtactgattttatg
gcaagacttcaaaagcatttggaatactttgttgcttccaaaatttctaatgacgaactc
tggaaaaatgtcaaagtcattctttctggtcacgaaactcctggtgaaggtgaacacaaa
ataatggattttattcgcactcaaagatcactacccgactatgatgctaatacacggcat
tgtctttatggtctcgatgctgacttaatcatgcttgggatgtgctcacatgaaccctat
tttgcattactacgtgaagaagttaaatttcgccgaaggaaggagaaagagccaacgttt
catgttaatcctgaagcaattaattttcatttacttcatctctcacttttacgagattat
cttgatcatgaattctcatctctcaaaaaatctttaccatttgactatgacctggaatgt
attattgatgactgggttctcatgggttttctttgtggtaatgatttcattcctcatctg
cctcattttcatattggtaaaaatgctctcaccacattgtacaaagtatacatggatgtt
ttacctagttgtaatggttacctcaatcaccaaggaaaactcaatctacaaaattttcaa
aagtttctccataaattatctgaaattgacgtagaaaatttcaatgaaatgaacgctgac
tttaagtatctagaatctaaatcaagtcgatttaaatctcctaaaaaattggtacgatac
gaagaatgtgatggaattattggagagtcattggagtcggggaatgatgatgattctaat
ttaatcgatttaggctcagaagaagcttcagatgctgaagaggaagatgaattgtcgatt
tctgaagaagatgatactctagaagatgaatttataatgcataaaagagattattatcgg
actaaaatgcattacgatgatgttactccagcagttttgaaagaacaagcatattgttat
atcaaggccatccagtggaatctacattattattacgatggttgcccgtcatggtcttgg
tattatcctcatcattatgcaccttatatttccgacgttaaaagctttgaaaatattgat
ctcacttttgaccttggtcaaccttttaaaccgtttgaacaactgttaggagttttacct
gcagcaagcaaagaatttttacccaaaccgtatcagagactagttacggatgaaagttca
ccattaaaagattattatccggaagaatttgaacttgacttaaatggtaaagttaatagt
tgggaagctgttgttgtaataccgtttatagatgaagaaaagttgttgaatgctgctcgt
tcttgtgagtcacaattatcagaaagagagaaaagaaggaattgccatggtcctcattta
ttgttcacgtattcaaaagatcatcaggagcctgtgccctcaactctacctggtttcttg
cctgatatagaagtgagtcatgcaaagttggtaaaagtcaataaagatgcctacaatatt
ccaatgaatcagatcaggaaaggtttactacctggtatcgatcctgatgtttatactcca
ggttttccaactctccgtactatggaacatactgctcgtttagaaaaagcaaatataagg
gtttttgaaatgccctcatctggatacagcattttggtcgatttaacacctaaaccagaa
gttactttaaaatctctactcagtgattaccttggcaaaacagtttacattaattggcct
ttccttgttgaagcgaagatttgtaaaatatgtgatggtgaaaaaatatttagttataac
agcgtaggccagagtgaatccagagcactaagagataaagagaagaaagaaattgattcg
caagtgaaaacaatcgcagaaagtctaaaaaaccgacgtggtatacatttacctcatttt
gatttcattctgtattgtaaaccattgactggatgtaagtacaacttgggatctaatggt
gtggtttctcttgataagcaatggtcacccgtagagaattgtgtccctttacctatggct
attaaggatcttccgataaggcaaggaatcatcaacaagcatataagctcaatgaattgt
tccctgttggatctatgttttattcttaatgaacaatattatggagatcttgctgatatt
attgaagttcaaaagaaaacaaacaaagtcaaagtaatgatacaaagagtagctgaacct
gatttgattgaagttaaaaatcgatcttatgaactaatgagcaaagaatacatgactaat
cacgcgttagctcagaggttgagcgttaacccgtgtattgtttcgagattaactgggaca
gttatggtagagaaagccaacggaaataaagttaatattggccttaacttaaaattcaat
acaagacgagaatatgtgcctggttactctcaaaggcgtgatgaaacttggttattttca
tggaaaactttgaaactcatggaagagtacaattctaaatttcctgaactttttattaat
ttaagtagacttgcggaccaaaaacgtttccaacctgaacaaatctttaatggacctaat
cccgaggcaaaaatatctgaggtcgcagcttggttgaaaactttgccttatcaaaatgct
cgacgaatgaagtttgatactgaagcacttgacgaggttgttgtcaaatgtattgaagat
gtattagacgcgcacaaagtttttgccaatcaatatgaaccgataacgttagtttattcc
acaaatcaactttatcgtccagccaatattattggccactcaccgcctgatcctaacgcc
acgtttaatctatttgatcgtgtggtaaatgttcgagaaggaatttcagttccacttggt
gcaagaggagtcatcattgggaaaacgaaagacaagcaagatgatgatacttatctgtgt
gatatagtctttgatgaatcttttattggaggaatgagttacaattgcagtgctggacgt
ggttatcgactccatccttacaacttgatcaacatatcttacaggaaaaagaaaggcagc
tatggggttagggaagattttgatatggctcctatccagcctacaaaaattgaccagcga
gataaaaaagcacgtcaaaaagcttctcctggctttaaaaagctgatcaatctgtctcct
aaccgtaaccatgaaagacatgactattcaaatagacgtgaatataatgatcaaggaaat
caaagctatactcatcacaattacagtgaccatcgaaataataaacaagtgatttcttct
ccaatacaaattaaccattcaccaaaatcactattccaaagtccacgtgaatctaacagc
agtgatttttcatccctttggaataaaatcaggaatcatgaagattctcaacccgaagaa
agtgctagtcatatggatacaactgcatcgactgctgcatctttggccaaagctaatatg
attaacaatgaactcgtcgaaatgtacaaaaatatggaattgaaacaaacagaaaacctt
aaatcgctaaaattagatgatacgagtattgatttaagtcttatccagtttccagtatta
ccaccacctcctcctaaatggtttgaaaaagatgaaacaagcccgatacctgaagcatta
gttgagaatcatcagatatttaatagagtaaaaaaggcacaaaaaaataaattatctgcc
tcaaatttgacaaaccagcaacaacagcaaaaaacgaatcgaaattcaaacacacagcaa
ctttatctaccatttccacgacaaatacaaggaccgaggccgaacaagttcattccattg
caagttgaaagaaacaagcaaaaactcgatgattctttcgcaaaacgatcatcagctcct
catgataataagaccgaacatcgtaaaaacgaaatggctatacaaaacaggcgatcatct
aaacatactgagagtgctaaaaagtccgtcaagcgtcgtgaaagtcgaattatggttgga
attggatcaaaacctgaagctgcagaacaggaaaatttaatattatttgaatga

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (57)   
   KEGG ORTHOLOGY (1)   
   RefGene (53)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (72)   

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