KEGG T00042: TVN1237

Thermoplasma volcanium: TVN1237

Entry

TVN1237 CDS T00042

Definition

ATP-dependent DNA ligase (EC:6.5.1.1)

Orthology

K10747

DNA ligase 1 [EC:6.5.1.1]

Organism

tvo Thermoplasma volcanium

Pathway

tvo03030	DNA replication
tvo03410	Base excision repair
tvo03420	Nucleotide excision repair
tvo03430	Mismatch repair

Class

Genetic Information Processing; Replication and repair; DNA replication [PATH:tvo03030]
Genetic Information Processing; Replication and repair; Base excision repair [PATH:tvo03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:tvo03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:tvo03430]

SSDB

Motif

Pfam:

DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C mRNA_cap_enzyme DNA_ligase_OB_2

Other DBs

NCBI-GI:

13542068

NCBI-GeneID:

1441377

UniProt:

Q979A1

Position

complement(1298537..1300303)

AA seq 588 aa
MKFSLVTDAFEKMSKTTKRTELTEILVELLKSADEDLQSLVYLIEGKLAPDYQGIETQMS
DKLIIKALSIVSNIPEEAVSETYSKLGDIGSVAREIAAKKNMRSLVNEDLTVKYVHDTLM
RMAKTSGSGSTKARIDAYVDLALSGTPADLMYITRIITGKLRIGVSDATILDAIILAFSD
EKYSEEIENAYNFHPDLGYIAVQLRLGNLESVINMGPTPMVPFKVMLAERLRSVDEIVQK
MNGKCAFEYKYDGMRTEIHIVDEKVRLFSRGNEETTGQFPDIVKSAKETFHVSSVILDGE
AVPYNPETGELYPFQVISQRRGRKYDLDKVSNEIPITVFLFDIVYINGKDLSKTPYAERR
RILEGLFKENDNFKLAKRIVSSDTGTITKFFNQAIEDGCEGLVAKSMADDSYYKAGARGW
LWIKLKRDYQAQLWDTIDLTVVGAFMGHGRRSGTYGALLLATYNEKNDTFETVCKLGSGF
TDDVLFSLPKRFAEFVSKEKPARVVSTIEPDVWIYPSIVMEIIGAEITISPVHTCAFGII
EKDAGLSIRFPRFTGKWRDDKKPEDSTTTQEIIEMYKEQKKTLTEEKS

NT seq 1767 nt +upstreamnt +downstreamnt
atgaaattttcactggtaacggacgcttttgagaagatgtcaaagacgactaagcgcaca
gaacttacggaaatattggtagagctccttaaatccgcagatgaagacttacaatccctt
gtttatctaattgagggaaaacttgctccagattaccagggcatagaaactcagatgtct
gataaactcataataaaagcactctccatagtttcaaatataccggaggaagctgtatca
gaaacttactccaagctaggagatatcggatccgtggcaagagaaattgcagcgaaaaaa
aacatgagatctctcgtgaatgaggatttaaccgttaagtacgtacacgatacacttatg
agaatggcgaaaactagcggttcaggaagtacaaaggctagaatagatgcctatgtagac
ttggctcttagcgggactcctgccgatctcatgtatataactcggataataacaggaaaa
ctccgtattggtgtatccgatgcgacaatacttgacgcaataatcctggctttttcagat
gaaaagtacagcgaggaaatagagaatgcatataatttccatcccgatctcggatacata
gctgtacagttaagattaggaaacttagaatcagtaataaacatgggccccaccccaatg
gttccgtttaaggtaatgttagctgaacgactacgttctgtagatgaaatagtccaaaaa
atgaacggtaaatgtgctttcgaatacaagtacgacggtatgcgaacagagatccatata
gtagatgaaaaagtgaggttgttttcgagaggaaacgaagaaactacaggtcaatttcct
gatatagtgaaatcggctaaagaaactttccatgtctcttctgttatactggatggggaa
gctgttccctacaacccagagacaggggaactttatcccttccaggttatttctcagaga
aggggccggaagtatgacctcgataaagtttccaacgaaattccaataaccgtttttctc
ttcgatatagtatatatcaatggaaaagatctgtcaaagactccatatgctgaacggcgc
aggatccttgaaggtcttttcaaggaaaatgacaatttcaaactggctaagaggattgta
tcaagtgatactggaaccataacaaagttctttaatcaagcaatagaagacggatgcgag
ggccttgttgccaagagcatggccgatgattcttattataaggctggtgctaggggatgg
ctttggataaaactaaagagagactatcaggcccagctttgggatactattgatctaacg
gtagttggtgcattcatgggccacggaagaaggagtggaacgtacggcgctttgcttctt
gcaacttataacgaaaagaatgatactttcgaaactgtgtgtaaacttggttcgggattt
acagatgatgttctattttcgttgccaaaaaggtttgctgagtttgtcagcaaagaaaaa
ccagccagagttgtaagcactatcgaaccagatgtttggatatacccctcaattgtcatg
gagataataggcgctgaaataacaataagccctgtacatacgtgtgccttcggcataata
gaaaaagatgcaggcttgtctataagattccccaggttcaccggcaaatggagagacgac
aaaaaaccagaagattctacaacaactcaggaaataatagaaatgtacaaggaacagaaa
aaaacattaacagaagagaagagttaa

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (17)   

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