KEGG   Trametes versicolor: TRAVEDRAFT_124375
Entry
TRAVEDRAFT_124375 CDS       T04795                                 
Name
(RefSeq) uncharacterized protein
  KO
K10777  DNA ligase 4 [EC:6.5.1.1]
Organism
tvs  Trametes versicolor
Pathway
tvs03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:tvs00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    TRAVEDRAFT_124375
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:tvs03400]
    TRAVEDRAFT_124375
Enzymes [BR:tvs01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     TRAVEDRAFT_124375
DNA repair and recombination proteins [BR:tvs03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    DNA Ligase 4 complex
     TRAVEDRAFT_124375
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N RNA_ligase
Other DBs
NCBI-GeneID: 19407945
NCBI-ProteinID: XP_008038631
JGI: 124375
Position
Unknown
AA seq 1083 aa
MSSPAKETEVPFSFFVELVQAIAAIKPHRAADKQPRSTRWVDTPTYKTFKRWLGALRERY
APLPAGMTTIVFRLLFPEEDVRRKYGLQEIRMAQYLTKILGVSTAAGGRGERLRKWKGED
ALGCLGNEVERVMDGRSIASVSSISLCRVDSLLSELAGKCAYSAEVYREGTHMSRRSREA
ILSELYTSLTPAKSAVMTQIILKDLRPLLYPIPQSACHYTSALLEYKSNAVAMLTKESAM
HAWDSSGRMSLIFKTRANLEEAATAFEGLNNGEVFPQPTVGVQIQIPKCVKGQGPAQSLK
SLKGADKVWVETKYDGERAQIHVWFDDDGDPRIRIFSKSGRDSTLDRAGIHSIVYAALGI
PYPGSYAEADAQSSDTLPFKRGIVVEAEMVAYSDALGRIDEFWRIRSLIARTAIGVRHRS
PPPGPSTQEEVMETQCSLISNGTDGGTRHLALVFFDILLLDDASLLPVPYGQRREVLERL
INVKPGYAMLAERTCIDTTLPNGEEMLRRAFARVVADHQEGVVIKADDAGYAEKRWPWVK
LKQDYIPGHGDAVDLVLLGASWEKERARELRVPPTAYTTFYFGALSNADELKKHPNRLPH
FEIIFTSSYGLDRAQLEELIFLIQNSDSAPYRHQAAASLSYTHTLSRSLSPPTVLLREPL
LAELFGAGFTKSPGNRFYELRFPRIAKIFRPSDRPWLDGTTLPEFQQIARTSVGRDRTGK
AEDDWAHSIFRPDVPPSPGLHCPVKRKRTEDMWVERLALVDAKVGSRSPTKRMRIDVPPT
RVTQGVRRENAENETGPSASVAAAGASGSPRQRVGMLRLDSVTNVVSFPPPLAPPSTSPL
SRRRNKDPCAPEPSNRPQSPPSSPPRLNNPIPSQPPAHMENTNQPFSLNAPGYSGTPTDR
LIVLTHSNEGMDAPQPQDPSARAPTPDELYYPSVQERPLDPVPFIPTARTLYQFLHNSVV
WLARPDGAPRPAWRAASQAIIPPSSRVNTLEAVVLACGWSETLACAWAARGVVFVDDSQD
GGAWSLQETMKELAALRAAALNAGKAAACKPVFLLSMTMLAHDALTETATVEEWESRAIC
RFG
NT seq 3252 nt   +upstreamnt  +downstreamnt
atgtcctctcccgcgaaggaaacagaggttcctttctcattcttcgttgagcttgtgcaa
gcaattgcagcgatcaaaccccatagggccgcagacaagcagccacgcagtacgcgctgg
gtcgacacacccacatacaagaccttcaaacgatggctcggtgctctacgcgagcggtac
gcaccgctgcctgccggtatgaccaccatcgtcttccgcctgcttttccccgaagaggat
gtccgccgcaagtatgggttgcaggaaattcgcatggcacagtaccttacaaagatcctt
ggagtctctaccgccgctggtgggagaggtgaacgactgaggaagtggaaaggcgaggat
gccctcggttgtcttggcaatgaagtcgaaagggtcatggacggccgctcgatagctagc
gtaagcagcataagcctctgtcgagtggattcgcttctctcggagctcgcaggtaaatgc
gcgtactccgctgaagtgtacagagaaggcacgcacatgagccgtcgctcgagagaagcc
attctctccgagctatacacttccttaactccggcaaagagcgcggtcatgacgcagatc
atcctaaaggacctccgtcccttgttataccccatcccacaatctgcatgtcattacacg
tccgcgctcctggagtataaaagtaacgctgtggcgatgctcacgaaagagtctgccatg
catgcatgggactcttccggtcgcatgtcgttgatcttcaagacgagggcaaacctagaa
gaggctgcaaccgctttcgaaggactcaacaacggcgaagtgtttcctcagcccacagtg
ggagtgcaaattcaaattccgaaatgtgtcaagggtcaaggacccgcccagtctctcaag
tctctgaaaggagcggataaagtttgggtagagaccaagtacgacggagaacgtgcccag
atccacgtatggttcgatgacgacggcgacccgcgcatccgtatcttcagcaaaagcggg
cgggactccaccctagatagagcgggcatccattccatcgtatatgctgcgctcgggatc
ccatacccaggttcatacgctgaagcggatgcgcagagctctgacacactacccttcaaa
cgtggcatcgtagtcgaggctgagatggtcgcatatagtgatgcactcgggcgcatagat
gaattttggcgcatacggagtctcatcgcaagaactgctatcggcgtgcgccatagaagt
ccgccgcctggaccatccactcaggaggaggttatggaaacccagtgctccttaatctct
aatggaacagacggcggcacacgccatctcgctctcgtgttcttcgacatcctgcttctc
gacgacgcctccctcctccctgttccatacggtcagcgacgcgaggttctagaacgcctc
atcaacgtgaaacccgggtacgcgatgctcgccgagcgtacttgtatcgacacaacactt
ccgaatggggaggaaatgcttagaagggcgttcgcgcgtgttgtggcggaccaccaggaa
ggtgtggtgatcaaggcggacgacgcagggtatgcggagaagcgatggccgtgggtcaag
ttaaagcaggactacatccctggtcatggcgatgccgtggatcttgtcctccttggggca
tcgtgggagaaggagcgtgcgagagaattaagagttcccccgacggcctatacaactttt
tacttcggcgcgctctctaatgcggatgagcttaaaaaacatcccaaccgcctaccacac
ttcgaaataatattcacgtcgtcgtacggcctcgaccgggcgcaactggaagagttgatc
ttcttgattcaaaattcggactctgcaccatatcgccatcaggcggctgccagtctatca
tacactcatacgcttagccggagcctctctcctcctaccgttctccttcgggagccgctg
ctggccgagctctttggggcaggcttcaccaagtcccctggcaaccgcttctacgagcta
cgtttcccgcggatagctaagatcttccgtccatccgatcgcccgtggctggacggcaca
acgctcccagagttccagcaaattgcccgcacctccgttgggcgcgaccgcaccggcaag
gctgaggacgactgggcacattccatatttcgccccgacgtgcctccctcgcccggtctg
cattgtccggtgaagcggaagcgcacggaggacatgtgggtagaacgcctcgcgctcgtc
gacgccaaggtgggctcgcgaagccccacgaagcggatgcgcatcgacgtccctcctaca
cgggtcacgcagggggtgcgtcgggagaatgctgagaacgagacaggaccttccgcctct
gtggcagccgcaggtgcaagtggcagcccaagacaaagggttggaatgctgcgtttagac
tctgtcacgaacgtggtgtcgttcccaccaccgctagcccctccttcgacatcgcctttg
tcgcgacgtcgcaacaaagacccttgtgctcctgagccctcaaataggccgcagagccct
ccttcttcgccaccacgcttaaataaccccatacccagtcaacccccagcacatatggag
aacaccaaccagccgttctccctgaacgctcccgggtactcgggcacccccactgatagg
ctgatagttctaacacactccaacgaagggatggacgccccccaaccgcaagatccgtcc
gcccgcgcgccgactccggatgagctttactacccaagtgtgcaggaacggcctcttgat
cctgtcccattcattcctacagcacgcaccctctaccagttcctgcacaactccgtagtc
tggctggcccgtccagacggtgccccgcgccccgcttggcgcgcggcgtcccaggcgatc
attcccccgagcagcagggtcaacacgctggaggcggtggtgctcgcgtgtgggtggagt
gagacactcgcttgtgcatgggcggcacgcggcgtcgtgttcgtggacgactcccaggac
ggcggcgcgtggtcgctccaagagaccatgaaggagctggcggcgttaagagcggcagcg
ctgaatgcgggtaaggcggcggcgtgcaagccggtattcctgctcagtatgacgatgctc
gcgcatgacgcgctcacggagacggcgacggtggaggagtgggagagccgggccatctgt
cgattcggttaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (26)   
   KEGG ORTHOLOGY (1)   
   RefGene (21)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (43)   

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