KEGG   Tropheryma whipplei Twist: TWT_080
Entry
TWT_080           CDS       T00116                                 
Symbol
pcrA
Name
(GenBank) ATP-dependent DNA helicase
  KO
K03657  ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
Organism
twh  Tropheryma whipplei Twist
Pathway
twh03420  Nucleotide excision repair
twh03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:twh00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    TWT_080 (pcrA)
   03430 Mismatch repair
    TWT_080 (pcrA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:twh03400]
    TWT_080 (pcrA)
Enzymes [BR:twh01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     TWT_080 (pcrA)
DNA repair and recombination proteins [BR:twh03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     TWT_080 (pcrA)
   MMR (mismatch excision repair)
    Other MMR factors
     TWT_080 (pcrA)
SSDB
Motif
Pfam: UvrD_C UvrD-helicase AAA_19 PcrA_UvrD_tudor UvrD_C_2 AAA_30 Mac ACAS_N AAA_11
Other DBs
NCBI-ProteinID: AAO44177
UniProt: Q83GZ5
Position
88753..90984
AA seq 743 aa
MTIPADLLKGLNPQQVEGVCYRGPTLLISAGAGSGKTKVLTHRIAGFLATGEASCDQILA
ITFTNKAASEMRHRTGDLVGLSVRDMQISTFHSVCVRILRECVGHLGKAKNFTIYDAADQ
RAIIKQICQSTDTFGLTASMVASQIGLLKNQMHTPDTYSRCLASNSTNGNSVTSITLQRE
QFILHVFRRYQEILKEANAFDFDDLISETVFLLQKSPEISAMYRNRWKYLLVDEYQDTNH
AQYRLILELTKGDKSDMSLTAVGDSDQSIYAFRGADIANIVNFENDFPDCHTILLEQNYR
SCQNILLAANALISNNQNRKDKNLWSELGAGEKVIAYCASSAEEEGRFVADRVRHLVDQG
ESLSDIAVFYRSNTQSRVIEESLIRQSIPYRVVGGTKFYERAEIKDILAYLTVIVNPDDT
LALRRILNVPKRGVGTVSENRLVEFASARGITLMQALSRIDEINIQPSAKSALRDLFYLL
NRFAGSSMPANELLDDLLKATDLLSRFNNTDDPQNEARKINIGDFVDSVEDFAKENPGGT
LSDFMTNIALMTSYDQSDDAPGQITLMTLHMAKGLEFDFVFLTGLEEGILPHEMSLKEKN
GIEEERRLAYVGMTRAKKVLHLSFSSYRKRYTDGVRLPSRFWDEIPQHLLRWHSRFTHKR
FTGPLYGFTARPAGESRQSVHVLKNRYPRESFSISDSVKHSVFGVGTVVDVLGLGPKQII
VVEFADKRRSLLASIAPIVKCKQ
NT seq 2232 nt   +upstreamnt  +downstreamnt
atgacaattccggccgatttactcaagggtttgaacccccagcaggtggagggtgtctgc
tatagggggccaacccttcttatttccgctggcgccggcagtggtaagactaaggtgctg
acccataggattgccggatttctggcaacaggtgaagcatcctgtgaccagatattggcg
attacattcacaaataaggctgcatctgaaatgcgccatcgcaccggggatcttgtcgga
ttatccgtcagagatatgcagatatctaccttccattcagtctgtgtgagaattcttcgt
gaatgtgtcgggcatctaggcaaggcaaagaatttcacgatatatgatgctgcagaccag
cgtgcgattatcaaacaaatctgtcagtctacggatacttttggactaacggcaagcatg
gttgcctcgcaaataggtctgttgaaaaaccaaatgcataccccagacacctattcgcgc
tgtcttgcctcaaattccactaatggcaattcggtaacttcgattaccttacagagagaa
cagtttatcctgcacgtttttaggcgctaccaggagattctgaaagaggcaaatgccttt
gactttgatgatcttatttccgaaacagtttttttactccagaaatccccggagatttct
gcaatgtatagaaaccgctggaagtatcttttggtagacgaatatcaggatacaaaccat
gcccagtataggcttattcttgagctgacaaaaggtgataaaagcgacatgtctctgaca
gctgtcggtgattcagatcagagcatatacgctttccggggtgctgatattgccaatata
gtgaatttcgaaaacgatttcccggactgtcacacaatcttattggagcagaattaccgc
tcttgccagaatattcttttagctgccaatgcgcttatttcaaataatcagaatcgtaag
gataaaaacctgtggagcgagctaggtgccggcgagaaggttattgcatactgtgcatct
tccgcagaagaagaggggcgttttgttgcagatagggtgcgccatctggtcgatcaaggt
gagagcttgtctgatatagcggttttttaccgatccaatactcagagcagagtaatagaa
gaatcgctcatcaggcaatcaattccatacagagttgttggcgggacaaaattttatgaa
cgcgctgaaataaaagatattctggcgtatctgacagtaattgtcaatccagacgatacg
ctggctctcaggcgtattctaaatgttccaaagcgtggtgtcggaacggtatcagagaat
aggcttgttgaatttgccagtgctagaggcataacacttatgcaggcactttctcgcatt
gatgaaattaacattcagccatctgccaaatcagcccttcgggatctcttttacttatta
aatcgctttgccggatctagtatgccggccaatgaactgctcgacgacctgctaaaagct
acagaccttctaagtcgattcaacaacactgatgatcctcaaaatgaggctagaaagatc
aatattggggactttgtagattcggttgaggatttcgcaaaagaaaaccccggaggcact
ctatctgactttatgacaaatattgcacttatgacatcctacgatcagtctgatgacgca
ccgggccagattaccctcatgaccttacatatggcaaagggtcttgaatttgattttgtg
tttctaactggtctggaagagggtatccttcctcacgaaatgtctcttaaagagaagaat
ggcatagaagaagagcgtagacttgcctatgttggtatgacgcgcgcaaaaaaagttctt
cacctttcttttagtagctaccgaaaacgatacacagatggggtgcgcttgccgagtcgt
ttttgggatgaaattcctcagcatctcctgcggtggcacagtcggtttacacacaagaga
tttaccggtcccctgtacgggtttacagcgcgtcccgcaggggagtcacggcaatcagtg
catgttttgaaaaaccgatacccccgtgagagtttttctatttcggatagtgtaaagcat
tccgtttttggtgttggaacggtggttgatgttcttggtttgggcccaaaacagataatt
gttgttgaatttgctgataaacgccgcagtttgctcgcgagtattgcacccattgtaaaa
tgcaaacaatag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (12)   
   KEGG ORTHOLOGY (1)   
   RefGene (9)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (29)   

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