KEGG   Thalassospira xiamenensis: TH3_15935
Entry
TH3_15935         CDS       T03639                                 
Name
(GenBank) NAD-dependent DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
txi  Thalassospira xiamenensis
Pathway
txi03030  DNA replication
txi03410  Base excision repair
txi03420  Nucleotide excision repair
txi03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:txi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    TH3_15935
   03410 Base excision repair
    TH3_15935
   03420 Nucleotide excision repair
    TH3_15935
   03430 Mismatch repair
    TH3_15935
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:txi03032]
    TH3_15935
   03400 DNA repair and recombination proteins [BR:txi03400]
    TH3_15935
Enzymes [BR:txi01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     TH3_15935
DNA replication proteins [BR:txi03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     TH3_15935
DNA repair and recombination proteins [BR:txi03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     TH3_15935
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     TH3_15935
   MMR (mismatch excision repair)
    DNA ligase
     TH3_15935
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      TH3_15935
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD HHH_5 PTCB-BRCT
Other DBs
NCBI-ProteinID: AJD53291
UniProt: A0A0B4Y1E0
Position
3477532..3479631
AA seq 699 aa
MSAEQGSTSSIVPDMPETRTEAGQQHAEISDRIRGFNEAYYINDEPLVPDAEYDALFNRL
IELEARYPTLKKNSPTQEVGAAPADGFAKIKHARPMLSLANAFSREDIVDFLARIRRFLN
LTAHSPVEIVGEPKIDGLSLSLRYENRELVSAATRGDGTEGEDVTANVAHITDIPKILPE
DAPADVVEIRGEVYMARSAFQKLNETQTETGGKTFANPRNAAAGSLRQLDPTISAKRPLR
FFAYSFGELSESLAQTHWDFISKIKGWGFVTNPHTTLLHNTDEIMAFYEELGNQRAELDY
DIDGIVYKVNDFELQLRLGFVSRSPRWAIAHKFPAEQARTRVKAIDIQVGRTGALTPVAR
LEPVTVGGVVVSNATLHNRDEIERLGVRVNDLVVIQRAGDVIPQVVEVITDERPDDAVPY
DFPETCPKCGSHAMREEGEAVTRCSGGLICPAQAVERLKHFVSRNAFDIEGMGGKHIEAF
FDLGWVKSPADIFRIEEKHGDALRKLEGWGDKSAEKLFASINERRTVPLDRFIYALGIRQ
IGQATAKLLARHYGSITEWRAAMNDAGTPDSDALRDLINIDQIGPSVAHDLIEFMAEEHN
RDVLDDLQAVLTIEDVEAPQVTDSPVSGKTVVFTGKLELFSRNEAKVKAESLGAKVAGSV
SAKTDFLVAGPGAGSKLKKAEELGVTVLDEQGWLDLIAD
NT seq 2100 nt   +upstreamnt  +downstreamnt
atgagcgccgaacaagggtcaacctcgtccattgtccccgacatgcccgaaacccggacc
gaggcaggccagcagcatgccgaaatttccgaccgtattcgcggctttaacgaagcgtat
tatatcaatgacgaaccactggttcccgatgcggaatatgatgcactgttcaatcgcctg
atcgaacttgaagcacgctatccgacgctcaagaagaacagtccgacgcaagaagttggt
gccgccccggccgatggttttgccaagatcaaacatgcgcgtccgatgctgtcgcttgcc
aacgcattttcgcgtgaggacattgttgattttctggcccgtattcgccgtttcctgaac
ctgacggcgcacagcccggtcgaaatcgttggcgaacccaagatcgatggtttgtcacta
tcgctgcgctatgaaaaccgtgaactggtcagtgctgcaacgcgcggcgacgggacagag
ggcgaagacgtcaccgccaatgtcgcccatatcaccgacatccccaaaatcctgcccgaa
gatgcaccggccgacgtcgttgaaatccgtggcgaggtttacatggcgcgttcggcattc
cagaagctgaatgaaacgcagaccgaaaccggtggtaaaacatttgccaatccgcgcaat
gccgccgccgggtcgcttcgccagcttgacccgaccatcagtgccaaacgcccgctgcgt
ttctttgcctacagctttggcgaactgtccgaaagtcttgcgcagacgcattgggatttc
atcagcaagatcaagggttggggctttgtcaccaatccccacacgacgcttttgcacaac
accgacgagatcatggcgttttacgaggaactcggcaatcaacgggccgaactcgattac
gacattgacggcattgtctataaggtcaacgacttcgaattgcagttgcggcttggcttt
gtcagccggtcaccgcgctgggcaattgcccataaattcccggccgaacaggcccgcacc
cgcgttaaggcgattgatatccaggttgggcgcactggcgcactaaccccggttgcgcgg
cttgaacccgtcacggttggcggcgttgtggtctcgaacgcgacccttcataaccgcgac
gaaatcgaacggctcggcgtaagggtcaatgaccttgtcgtcattcagcgggctggtgat
gtgatcccgcaggtggtcgaggtcattactgatgaacggcccgatgacgccgtgccctat
gacttcccggaaacctgcccgaaatgcggcagccacgccatgcgcgaagaaggcgaagcc
gtcacacgatgcagcggcgggctgatctgtccggcacaggcggttgaacgactgaaacat
tttgtgtcgcgcaatgcgttcgatatcgaaggcatgggcggaaagcatatcgaggcgttc
tttgacctcggctgggtcaaatcacctgccgatattttccggatcgaggaaaagcacggg
gacgcccttcgaaagcttgaaggctggggcgataaatcggccgaaaagctgtttgccagc
atcaatgaacggcggaccgtgccgctggacaggtttatctatgcccttggcatccgccag
atcggtcaggcgacggcaaagcttctggcgcggcattacggatcgatcacggaatggcgc
gcagcgatgaatgatgccggaacacccgatagtgacgcgttacgcgatctgatcaatatc
gatcagatcggccccagtgtggcccatgacctgattgaattcatggccgaagaacataac
cgcgatgttcttgatgaccttcaggccgttctgaccatcgaagatgtcgaagcaccgcag
gttaccgacagccccgtcagcggcaaaacggttgtctttaccggcaagctggaactgttt
tcgcgcaacgaggcaaaggtcaaagccgaaagccttggtgcgaaagtagccggttcggta
tcggcaaaaaccgattttctggttgcaggaccgggtgcgggctccaaattaaagaaagca
gaagaattaggtgttactgttctggatgaacaaggatggcttgatctgatcgccgattga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (121)   
   KEGG ORTHOLOGY (1)   
   RefGene (118)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (145)   

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