KEGG   Thermodesulfovibrio yellowstonii: THEYE_A0546Help
Entry
THEYE_A0546       CDS       T00775                                 
Gene name
ligD
Definition
DNA ligase D, 3'-phosphoesterase domain
Orthology
K01971  
DNA ligase (ATP) [EC:6.5.1.1]
Organism
tye  Thermodesulfovibrio yellowstonii
Pathway
Base excision repair
Nucleotide excision repair
Mismatch repair
Class
Genetic Information Processing; Replication and repair; Base excision repair [PATH:tye03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:tye03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:tye03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: 
Motif
Other DBs
NCBI-GI: 
NCBI-GeneID: 
UniProt: 
Position
complement(531258..531674)
Genome map
AA seq 138 aa AA seqDB search
MPYFVVHEHHAKKLHFDLRLEKDGVLKSWAIPKGPSMNPQDKRLAIQVEDHALEYGNFEG
IIPEGQYGAGKVYIWDKGQYSTVKGSPEEGQWEIFMEGEILKGNFVLVKLKGKSDEWLFI
KKKDKFADYNFKLKLKFP
NT seq 417 nt NT seq  +upstreamnt  +downstreamnt
atgccttactttgttgtgcacgaacatcatgcaaaaaagcttcattttgacctcagacta
gaaaaggatggagtgctcaaatcttgggcaattcccaaaggtccttcaatgaatcctcaa
gataagcgtcttgcaattcaggttgaagatcatgctttagagtatggtaactttgaaggt
attattcctgaaggacagtatggtgcaggtaaagtttatatctgggataaagggcaatat
agcacagtgaaaggctctcctgaagaaggacagtgggaaatttttatggaaggagaaata
ttaaaaggaaactttgttttagtgaaacttaaggggaaatctgatgaatggctttttatc
aagaaaaaagataaatttgcagactataactttaagctaaaacttaaatttccctga
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